View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_high_36 (Length: 226)

Name: NF6855_high_36
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_high_36
NF6855_high_36
[»] chr5 (4 HSPs)
chr5 (80-215)||(33699975-33700110)
chr5 (82-215)||(8317324-8317457)
chr5 (86-215)||(36193756-36193885)
chr5 (86-216)||(25561138-25561269)
[»] chr8 (6 HSPs)
chr8 (80-215)||(10335362-10335497)
chr8 (83-215)||(39823366-39823498)
chr8 (86-216)||(32826592-32826722)
chr8 (81-215)||(11796587-11796713)
chr8 (86-181)||(43899058-43899154)
chr8 (80-181)||(28321011-28321112)
[»] chr7 (5 HSPs)
chr7 (80-215)||(22609817-22609952)
chr7 (80-187)||(37961564-37961671)
chr7 (86-215)||(46205837-46205966)
chr7 (80-153)||(29772422-29772495)
chr7 (143-216)||(43202358-43202431)
[»] chr3 (7 HSPs)
chr3 (80-215)||(54383664-54383799)
chr3 (129-213)||(41410540-41410624)
chr3 (80-196)||(38360172-38360288)
chr3 (117-215)||(26813971-26814069)
chr3 (86-181)||(8913905-8914001)
chr3 (80-124)||(41409799-41409843)
chr3 (110-200)||(17071896-17071986)
[»] chr6 (5 HSPs)
chr6 (80-215)||(34576148-34576283)
chr6 (86-197)||(6266433-6266544)
chr6 (80-181)||(9961146-9961247)
chr6 (80-178)||(33029677-33029775)
chr6 (80-151)||(14113393-14113464)
[»] chr1 (9 HSPs)
chr1 (80-215)||(6797432-6797566)
chr1 (80-215)||(47030428-47030563)
chr1 (80-215)||(1141484-1141618)
chr1 (80-215)||(26028970-26029105)
chr1 (80-167)||(50797990-50798077)
chr1 (110-215)||(49775703-49775808)
chr1 (86-216)||(9245795-9245925)
chr1 (80-181)||(30057568-30057667)
chr1 (80-168)||(40428471-40428556)
[»] scaffold0063 (1 HSPs)
scaffold0063 (88-210)||(35769-35889)
[»] chr2 (3 HSPs)
chr2 (80-215)||(40611581-40611716)
chr2 (83-215)||(33425104-33425235)
chr2 (105-215)||(24441967-24442077)
[»] chr4 (9 HSPs)
chr4 (86-216)||(2933571-2933701)
chr4 (80-215)||(4641601-4641737)
chr4 (86-216)||(4734121-4734251)
chr4 (86-215)||(12842295-12842425)
chr4 (17-68)||(21317633-21317684)
chr4 (80-181)||(45283081-45283182)
chr4 (80-180)||(40262409-40262509)
chr4 (81-124)||(42989750-42989793)
chr4 (80-158)||(16182244-16182322)
[»] scaffold0227 (1 HSPs)
scaffold0227 (80-197)||(5043-5160)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 33699975 - 33700110
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33699975 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaa 33700074  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||| |||||||||||||| || ||||||||||||||    
T  33700075 attgcaaaagagttgttggttgtaccaaaatgatgt 33700110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 8317324 - 8317457
Alignment:
Q  82 gttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaat 181  Q
    |||||||||| |||||||||||||||  | |||| ||||||||   ||||| |||||||| |||||||||||| |||||| |||||||||||||||||||    
T  8317324 gttgtgttatttgtacaaccaaaattataaaacttatgcaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaat 8317423  T
Q  182 tacaaaagagttgttgattataccaaaatgatgt 215  Q
      ||||| |||||||| || ||| ||||||||||    
T  8317424 agcaaaaaagttgttggttgtacaaaaatgatgt 8317457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 36193885 - 36193756
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 185  Q
    |||||||||||||| |||||||||||||||||||||||| | ||| ||| |||||  ||||||||||||||||||| |||||| |||||| |||||  ||    
T  36193885 tgttatatgtacaatcaaaattgaacaactaatgcaacaccttttaatattgtgaagagcacgcaaatcgaaatcactaaaaaaatattataaaatagca 36193786  T
Q  186 aaagagttgttgattataccaaaatgatgt 215  Q
    |||  ||||||| || ||| ||||||||||    
T  36193785 aaaaggttgttggttgtacaaaaatgatgt 36193756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 25561269 - 25561138
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaatta-c 184  Q
    |||||| ||| |||| ||||||||| |||| ||||||||   ||| |||  ||||| |||| |||||||||||||| |||||  ||||||||||| || |    
T  25561269 tgttatttgtgcaactaaaattgaataacttatgcaacaatctttaatatcgtgaggagcatgcaaatcgaaatcactaaaagaatattaaaaaaatagc 25561170  T
Q  185 aaaagagttgttgattataccaaaatgatgtc 216  Q
    |||| |||||||| || ||| ||||| |||||    
T  25561169 aaaatagttgttggttgtacaaaaataatgtc 25561138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 10335362 - 10335497
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10335362 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacactctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaa 10335461  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||| |||||||||||||| || || |||||||||||    
T  10335462 attgcaaaagagttgttggttgtatcaaaatgatgt 10335497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 39823498 - 39823366
Alignment:
Q  83 ttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaatt 182  Q
    |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39823498 ttgtgttacatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaaatt 39823399  T
Q  183 acaaaagagttgttgattataccaaaatgatgt 215  Q
     |||||||||||||| || || |||||||||||    
T  39823398 gcaaaagagttgttggttgtatcaaaatgatgt 39823366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 32826592 - 32826722
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 185  Q
    |||||| |||||||| |||||||||||||| | ||||||   ||| ||| |||||| | ||||||||||||||||| |||||  |||||||||||| | |    
T  32826592 tgttatttgtacaactaaaattgaacaacttaggcaacaaactttaatattgtgaggaacacgcaaatcgaaatcactaaaagaatattaaaaaataata 32826691  T
Q  186 aaagagttgttgattataccaaaatgatgtc 216  Q
    ||| |||||||| || ||| |||||||||||    
T  32826692 aaatagttgttggttttacaaaaatgatgtc 32826722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 11796713 - 11796587
Alignment:
Q  81 agttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaa 180  Q
    ||||||||||| |||||||||||||||| |||||| |||||||| ||      |||||||| |||||||||||| |||||| |||||||||||||||||     
T  11796713 agttgtgttatttgtacaaccaaaattgtacaacttatgcaacaacac-----aatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaa- 11796620  T
Q  181 ttacaaaagagttgttgattataccaaaatgatgt 215  Q
       ||||| |||||||| || ||| ||||||||||    
T  11796619 --gcaaaaaagttgttggttgtacaaaaatgatgt 11796587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 43899154 - 43899058
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatc-attaaaaatatattaaaaaat 181  Q
    |||||| |||||||||||||||||||||||||||||||| | ||| ||| ||| || |||||||||||| ||||| || ||||| ||||||||||||    
T  43899154 tgttatttgtacaaccaaaattgaacaactaatgcaacaccctttaatactgtaaggagcacgcaaatcaaaatcaataaaaaaaatattaaaaaat 43899058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 28321011 - 28321112
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||||||||||||||||  ||||||| |||||| |||||||| | |||||   |||||| |||||||||||| |||||| ||||||  |||||||||    
T  28321011 gagttgtgttatatgtacaattaaaattggacaacttatgcaacaacctttgactttgtgaggagcacgcaaatcaaaatcaataaaaaagtattaaaaa 28321110  T
Q  180 at 181  Q
    ||    
T  28321111 at 28321112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 22609952 - 22609817
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  22609952 gagttgtattatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatatttaaaa 22609853  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||| ||||||||||||||||| || |||||||||||    
T  22609852 attgcaaaagagttgttgattgtatcaaaatgatgt 22609817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 37961671 - 37961564
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||||||||||||||||||||||||| |||| | |||||||| | ||||| | |||||| |||||||||||| |||||| ||||||  |||||||||    
T  37961671 gagttgtgttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaatcaaaatcagtaaaaaagtattaaaaa 37961572  T
Q  180 attacaaa 187  Q
    ||||||||    
T  37961571 attacaaa 37961564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 46205837 - 46205966
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 185  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||| ||| |||||| ||||||  ||||||||||| |||||| |||||| |||||   |    
T  46205837 tgttatatgtacaaccaaaattggacaactaatgcaacaccttttaatattgtgaggagcacgtgaatcgaaatcactaaaaaaatattataaaatagta 46205936  T
Q  186 aaagagttgttgattataccaaaatgatgt 215  Q
    |||  ||||||| || ||| ||||||||||    
T  46205937 aaaaggttgttggttgtacaaaaatgatgt 46205966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 29772495 - 29772422
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaat 153  Q
    ||||| |||||||||||||| || |||||||||||| |||||||| | ||||||| |||||| ||||| |||||    
T  29772495 gagttatgttatatgtacaatcagaattgaacaacttatgcaacaacttttgatattgtgaggagcacacaaat 29772422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 43202431 - 43202358
Alignment:
Q  143 agcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaatgatgtc 216  Q
    |||||||||||||||||||  |||||  |||||||||||  ||||| | |||||| || ||| |||||||||||    
T  43202431 agcacgcaaatcgaaatcaccaaaaaagtattaaaaaatagcaaaataattgttggttgtacaaaaatgatgtc 43202358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 54383664 - 54383799
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  54383664 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcctttgataacgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaa 54383763  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||| ||||||||||||||  | ||||||||||||||    
T  54383764 attgcaaaagagttgttggctgtaccaaaatgatgt 54383799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 41410540 - 41410624
Alignment:
Q  129 ttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaatgat 213  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||  || ||||||||||||    
T  41410540 ttgataatgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaaattgcaaaagagttgttagttgtaccaaaatgat 41410624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 38360172 - 38360288
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||||||||||||||||||||||||| |||| | |||||||| | ||||| | |||||| |||||||||||  |||||| ||||||  |||||||||    
T  38360172 gagttgtgttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaattaaaatcagtaaaaaagtattaaaaa 38360271  T
Q  180 attacaaaagagttgtt 196  Q
    ||| ||||  |||||||    
T  38360272 attgcaaagaagttgtt 38360288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 26813971 - 26814069
Alignment:
Q  117 atgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaatgatgt 215  Q
    |||||||| | ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||   |||| |||||||| || ||| ||||||||||    
T  26813971 atgcaacaacctttgacaatgtgagaagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagtaaaaaagttgttggttgtacaaaaatgatgt 26814069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 8914001 - 8913905
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatc-attaaaaatatattaaaaaat 181  Q
    |||||| ||||||| |||||||||||||||||||||||| | ||| ||| |||||| ||||| |||||||||||| || ||||| ||||||||||||    
T  8914001 tgttatttgtacaatcaaaattgaacaactaatgcaacaacctttaatattgtgaggagcacacaaatcgaaatcaataaaaaaaatattaaaaaat 8913905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 41409799 - 41409843
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 124  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  41409799 gagttgtgttatatgtacaatcaaaattgaacaactaatgcaaca 41409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 17071986 - 17071896
Alignment:
Q  110 acaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgatt 200  Q
    |||||||||||||||    || ||| |||||| |||||| ||||| |||| | |||||| |||||||||||||  |||| |||||||||||    
T  17071986 acaactaatgcaacaatccttaatattgtgaggagcacgtaaatcaaaatgaataaaaaaatattaaaaaattgtaaaaaagttgttgatt 17071896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 34576148 - 34576283
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34576148 gagttgtgttatatatacaatcaaaattgaacaactaatgcaacaccttttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaa 34576247  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||| |||||||||||||  || || |||||||||||    
T  34576248 attgcaaaagagttgttagttgtatcaaaatgatgt 34576283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 6266433 - 6266544
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 185  Q
    |||||| |||||||| |||||||||||||| || ||||| | ||| ||| |||||| ||||||||||||||||||| |||||| ||||||||||||  ||    
T  6266433 tgttatttgtacaactaaaattgaacaacttatacaacaacctttaatattgtgaggagcacgcaaatcgaaatcactaaaaaaatattaaaaaatagca 6266532  T
Q  186 aaagagttgttg 197  Q
    ||| ||||||||    
T  6266533 aaatagttgttg 6266544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 9961146 - 9961247
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    |||||||||||| |||||||| |||||||||||| ||||| |||| ||| | | | ||||||||||||| |||||||||||| | |||| ||||||||||    
T  9961146 gagttgtgttatttgtacaactaaaattgaacaattaatgtaacaccatataacattgtgagaagcacgtaaatcgaaatcaatcaaaaaatattaaaaa 9961245  T
Q  180 at 181  Q
    ||    
T  9961246 at 9961247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 33029775 - 33029677
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaa 178  Q
    |||||||||||| | |||||||||||||| |||||||| |||||| ||| | | | |||||  |||| | |||||||||||| | |||| |||||||||    
T  33029775 gagttgtgttatttatacaaccaaaattggacaactaacgcaacaccatataacattgtgatgagcatgtaaatcgaaatcaatcaaaaaatattaaaa 33029677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 14113464 - 14113393
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaa 151  Q
    ||||||||||||||||||||  ||||||| | || | |||||||| | ||||||| |||||| |||||||||    
T  14113464 gagttgtgttatatgtacaattaaaattggataatttatgcaacaacctttgatattgtgaggagcacgcaa 14113393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 6797566 - 6797432
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6797566 gagttgtgttatatgtacaactaaaattgaacaactaatgcaacaccctttaataatgtgagaagcacgcaaattaaaatcattaaaaatatattaaaaa 6797467  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||||  |||||||| ||| || || |||||||||||    
T  6797466 atta-taaagagttattggttgtatcaaaatgatgt 6797432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 47030428 - 47030563
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| |||| |||||||||||||||||| |||||     
T  47030428 gagttgttttatatgtacaaccaaaattgaacaactaatgcaacaaccattgataatgtgagaagcacgtaaattgaaatcattaaaaatatagtaaaat 47030527  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||| |||||||||| ||| || |||||||| |||||    
T  47030528 attgcaaaagagttattggttgtaccaaaacgatgt 47030563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 1141618 - 1141484
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaag-cacgcaaatcgaaatcattaaaaatatattaaaa 178  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||| |||||  ||||||||| |||| ||| |||||||||| |||    
T  1141618 gagttgtgttatatgtacaaccaaaattgaataactaatgcaacaccctttaataatgtaagaagaaacgcaaatcaaaattatt-aaaatatatt-aaa 1141521  T
Q  179 aattacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  1141520 aattacaaaagagttgttggttatactaaaatgatgt 1141484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 26028970 - 26029105
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    |||||||||||| |||||||| ||||||| |||||| || |||||   ||||| |||||||| |||||||||||| |||||| |||||||||||||||||    
T  26028970 gagttgtgttatttgtacaactaaaattgtacaacttatacaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaa 26029069  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    || |||||| |||||||| || ||| ||||||||||    
T  26029070 ataacaaaaaagttgttgcttgtacaaaaatgatgt 26029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 50797990 - 50798077
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaa 167  Q
    |||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||| |||||  ||||||||||||    
T  50797990 gagttgtgttatatgtacaaccaaaattgaacgacaaatgcaacaccctttgataatgtgagaagcacacaaattaaaatcattaaaa 50798077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 49775808 - 49775703
Alignment:
Q  110 acaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaa 209  Q
    |||||| |||||||| | ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||| |||||| |||||||| || ||| ||||    
T  49775808 acaacttatgcaacaacctttgacaatgtgaagagcacgcaaatcaaaatcaataaaaatatattaaaaaataacaaaaaagttgttggttgtacaaaaa 49775709  T
Q  210 tgatgt 215  Q
    ||||||    
T  49775708 tgatgt 49775703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 9245795 - 9245925
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 185  Q
    |||||| ||||||| ||||||||||||||| |||||||| | ||| ||| ||||||  | ||||||||  ||||||||||||  ||||||||||||  ||    
T  9245795 tgttatttgtacaatcaaaattgaacaacttatgcaacaacttttaatattgtgaggtgtacgcaaataaaaatcattaaaagaatattaaaaaatagca 9245894  T
Q  186 aaagagttgttgattataccaaaatgatgtc 216  Q
    ||| |||||||| || ||| |||||||||||    
T  9245895 aaatagttgttggttgtacaaaaatgatgtc 9245925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 30057568 - 30057667
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||| |||||| |||||||||||||||| ||  || |||||||| | ||||| |||||||| | ||| |||||| |||||| || ||||||||||||||    
T  30057568 gagttatgttatttgtacaaccaaaattgtac--cttatgcaacaacttttgacaatgtgaggaacactcaaatcaaaatcagtacaaatatattaaaaa 30057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 40428471 - 40428556
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaa 168  Q
    |||||||||||| |||||||| ||||||| ||||||    ||||| | ||||| ||||||||||||||||||||| |||||| ||||||    
T  40428471 gagttgtgttatttgtacaactaaaattgtacaactt---caacaacctttgacaatgtgagaagcacgcaaatcaaaatcagtaaaaa 40428556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 35769 - 35889
Alignment:
Q  88 ttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaa 187  Q
    ||||||||||||||||| |||||||||||||| |||||  ||||| | |||||| ||||||||||||||||| |||||||| ||||||||||| | ||||    
T  35769 ttatatgtacaaccaaatttgaacaactaatgtaacattttttgacattgtgaggagcacgcaaatcgaaattattaaaaa-atattaaaaaa-tccaaa 35866  T
Q  188 agagttgttgattataccaaaat 210  Q
    ||||||||||||| |||||||||    
T  35867 agagttgttgattgtaccaaaat 35889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 40611716 - 40611581
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    |||||||||||| |||||||| | | ||| |||||| |||||||| | ||||| |||||||| |||||||||||| |||||| |||||||||||||||||    
T  40611716 gagttgtgttatttgtacaacgatatttgtacaacttatgcaacaacctttgacaatgtgaggagcacgcaaatcaaaatcaataaaaatatattaaaaa 40611617  T
Q  180 attacaaaagagttgttgattataccaaaatgatgt 215  Q
    ||  ||||| |||||||| || ||| ||||||||||    
T  40611616 atagcaaaaaagttgttggttgtacaaaaatgatgt 40611581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 33425104 - 33425235
Alignment:
Q  83 ttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaatt 182  Q
    ||||||||||||||||  |||||||| |||||| ||||||||   ||||||| ||||||||||||||||||| |||||| |||||| |||||||||| ||    
T  33425104 ttgtgttatatgtacattcaaaattggacaacttatgcaacaatctttgatattgtgagaagcacgcaaatcaaaatcaataaaaa-atattaaaaattt 33425202  T
Q  183 acaaaagagttgttgattataccaaaatgatgt 215  Q
      |||  |||||||| |||||| ||||||||||    
T  33425203 gtaaagaagttgttggttatacaaaaatgatgt 33425235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 24442077 - 24441967
Alignment:
Q  105 attgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattatac 204  Q
    |||| ||||||||||||||| | ||| ||| |||||| |||| |||||||||||||| |||||| |||||| |||||  |||||  ||||||| || |||    
T  24442077 attggacaactaatgcaacaccttttaatattgtgaggagcatgcaaatcgaaatcactaaaaaaatattataaaatagcaaaaaggttgttggttgtac 24441978  T
Q  205 caaaatgatgt 215  Q
     ||||||||||    
T  24441977 aaaaatgatgt 24441967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 2933701 - 2933571
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 185  Q
    |||||| ||||||||||||||||||||||||||| ||||   ||| ||| |||||| ||| |||||||| |||||| |||||| ||||||||||||   |    
T  2933701 tgttatttgtacaaccaaaattgaacaactaatgtaacaatttttaatattgtgaggagcgcgcaaatcaaaatcactaaaaaaatattaaaaaatagta 2933602  T
Q  186 aaagagttgttgattataccaaaatgatgtc 216  Q
    ||| |||||||| || ||| |||||||||||    
T  2933601 aaatagttgttggttgtacaaaaatgatgtc 2933571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 4641601 - 4641737
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaata-tattaaaa 178  Q
    ||||||||| ||||||||||||||||||| | || | |||||||| | ||||| | ||||||||||||||||||  |||||| |||||| | ||||||||    
T  4641601 gagttgtgtaatatgtacaaccaaaattggataatttatgcaacaacctttgacattgtgagaagcacgcaaattaaaatcaataaaaaaagtattaaaa 4641700  T
Q  179 aattacaaaagagttgttgattataccaaaatgatgt 215  Q
    |||| ||||  |||||||| || ||| ||||| ||||    
T  4641701 aattgcaaagaagttgttggttgtacaaaaattatgt 4641737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 4734121 - 4734251
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 185  Q
    |||||| |||| || ||||||||||||| | |||||||| | ||| ||| |||||| ||||||| |||| |||||| |||||  ||||||||||||  ||    
T  4734121 tgttatttgtataatcaaaattgaacaatttatgcaacaacttttaatattgtgaggagcacgccaatcaaaatcactaaaagaatattaaaaaatagca 4734220  T
Q  186 aaagagttgttgattataccaaaatgatgtc 216  Q
    ||| |||||||| || ||| |||||||||||    
T  4734221 aaatagttgttggttgtacaaaaatgatgtc 4734251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 12842425 - 12842295
Alignment:
Q  86 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatca-ttaaaaatatattaaaaaattac 184  Q
    |||||| ||||||||||||||| |||||||||| ||||| | ||| ||| |||||| | || ||||||| |||||| | ||||| ||||||||||||  |    
T  12842425 tgttatttgtacaaccaaaattcaacaactaatacaacaacctttaatattgtgaggaacatgcaaatcaaaatcactaaaaaaaatattaaaaaatagc 12842326  T
Q  185 aaaagagttgttgattataccaaaatgatgt 215  Q
    |||  |||||||| || ||| ||||||||||    
T  12842325 aaagaagttgttggttgtacaaaaatgatgt 12842295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 21317633 - 21317684
Alignment:
Q  17 tgtcacaaaattggtttctctttgtaacactttttgtattaccaataacatt 68  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  21317633 tgtcacaaaagtggattctctttgtaactctttttgtattaccaataacatt 21317684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 45283081 - 45283182
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    ||||| |||||| |||||||  ||||||| | ||||||||||| | ||| | | |||||||| || | |||||||||||||| |||||| ||||||||||    
T  45283081 gagttatgttatttgtacaattaaaattggagaactaatgcaataccatataacaatgtgaggagtatgcaaatcgaaatcaataaaaaaatattaaaaa 45283180  T
Q  180 at 181  Q
    ||    
T  45283181 at 45283182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 40262509 - 40262409
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
    |||||||||||| |||||| | ||||||| ||||||||||||||| ||||| | |   |||| |||| |||||| ||||||| | |||| ||||||||||    
T  40262509 gagttgtgttatttgtacatctaaaattggacaactaatgcaacaccattttacatcttgaggagcatgcaaattgaaatcagtcaaaaaatattaaaaa 40262410  T
Q  180 a 180  Q
    |    
T  40262409 a 40262409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 42989750 - 42989793
Alignment:
Q  81 agttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 124  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  42989750 agttgtattatttgtacaaccaaaattgaacaactaatgcaaca 42989793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 16182244 - 16182322
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaa 158  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||| ||  | | |||||||| |||| |||||| ||||    
T  16182244 gagttgtgttattcgtacaaccaaaattggacaactaatgcaacaccaaataacaatgtgaggagcatgcaaattgaaa 16182322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 5043 - 5160
Alignment:
Q  80 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 179  Q
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T  5043 gagttgtgttatatgtacaactaaaattggacaatttatgcaacaatctttgatattgtaaggaacacgcaaatcaaaatcattaaaaaagtattaaaaa 5142  T
Q  180 attacaaaagagttgttg 197  Q
    ||| ||||  ||||||||    
T  5143 attgcaaagaagttgttg 5160  T

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