View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6855_high_38 (Length: 202)
Name: NF6855_high_38
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_high_38 |
 | |
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| [»] chr1 (12 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2007231 - 2007432
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2007231 |
tggctgcaggtgctgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaac |
2007330 |
T |
|
| Q |
101 |
tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgcttgctgat |
200 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2007331 |
tgctctatgtgtgttcaggagctcgcctaatcttaaagaattaaatatatttgtgagtactactcatttagtttggctcgacttttctttgcttgctgat |
2007430 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
2007431 |
tt |
2007432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 2012716 - 2012916
Alignment:
| Q |
3 |
gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactg |
102 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
2012716 |
gctgcaggtgttgtgccagtaaagcttcctacaccttgtattaatctaacgtatctttggttaagtataaacttctacgacttgaaagaaatttcaactg |
2012815 |
T |
|
| Q |
103 |
ctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttga----cttttctttgcttgctg |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
2012816 |
ctctatgtgtgttcagaagctcgcctaatcttaaagaattaaatatatttgtgag---tactcatttagtttggcttgactggcttttctttggttgctg |
2012912 |
T |
|
| Q |
199 |
attt |
202 |
Q |
| |
|
|||| |
|
|
| T |
2012913 |
attt |
2012916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 2020472 - 2020656
Alignment:
| Q |
3 |
gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2020472 |
gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaactg |
2020571 |
T |
|
| Q |
103 |
ctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttcttt |
190 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || || || | ||| ||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
2020572 |
ctctatgtgtgttcagaagctcgcctaatcttaaaaaactagaaataattgtgag---tactcatttactttgacttgacttttcttt |
2020656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 2011219 - 2011406
Alignment:
| Q |
3 |
gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactg |
102 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||| | ||| ||| | |||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
2011219 |
gctgcaggtgttgtgccactaaagcttcctacaccttgtattaatctaatgtctctatggttaagtataaacttcaatgagttgaaggaaatttcaactg |
2011318 |
T |
|
| Q |
103 |
ctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgct |
193 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||| |||| ||||||||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
2011319 |
ctctaagtgtgttcagaagctcgcctaatcttaaagaactaaaaatatttgtgag---tactcatttactttgaattgacttttctttgct |
2011406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 1793464 - 1793642
Alignment:
| Q |
4 |
ctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactgc |
103 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||| ||| |||||||||||||| | || ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1793464 |
ctgcaggtgttgtgccaacaatgcttcctacaccttgtatcaatataacatatctttggttaagcataaacttcaatgacttgaaggaaatttcagctgc |
1793563 |
T |
|
| Q |
104 |
tctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttt |
185 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||| ||||| || ||||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
1793564 |
tctatgcgtgtttagaagctcgcctaatcttaaagaactacatatattagtgag---tgctcatttagtttggcttgacttt |
1793642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 4334295 - 4334135
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac |
100 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||| | ||||| | | ||||||||| || || || |||||||||| | |
|
|
| T |
4334295 |
tggctgcaggtgttttgccagtaaagcttcctacaccttgtattaatctaagttttctttccttaaccataaacttcgataacatggaggaaatttcggc |
4334196 |
T |
|
| Q |
101 |
tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtact |
161 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| ||||||| |||| |||||||||| |
|
|
| T |
4334195 |
cgctctttgtgtgttcagaagctcacctaaccttcaaaaattaaaaatatctgtgagtact |
4334135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 3379489 - 3379649
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggctta-gtataaacttctatgacttgaaggaaatttcaa |
99 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
3379489 |
tggctgcaggtgatgtatcagtaaagcttcctacaccttgtatcgatctaagttatctttc-cttatgtataaacttcaatgtcttgaaggaaatttcgg |
3379587 |
T |
|
| Q |
100 |
ctgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtact |
161 |
Q |
| |
|
|||| || || || |||||||||||||||| ||| || |||| | ||||||||||||||| |
|
|
| T |
3379588 |
ctgccctttgcttgctcagaagctcccctaaccttaaaaaattggaaatatttgtgagtact |
3379649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 3373534 - 3373624
Alignment:
| Q |
69 |
ataaacttctatgacttgaaggaaatttcaactgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagta |
159 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| || || |||||||||| ||||||||| || ||||| | ||||||||||||| |
|
|
| T |
3373534 |
ataaacttcaatgacttgaaggaaatttcagctgctctttgcttgctcagaagctcacctaatcttaaaaaattagaaatatttgtgagta |
3373624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 3362478 - 3362664
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggctta-gtataaacttctatgacttgaaggaaatttcaa |
99 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| ||||||||||| ||||| | | |||||| |||| | ||| ||||| ||||||||||| |||||| |
|
|
| T |
3362478 |
tggctgcaggtgttgtgccaataaagcttcccacaccttgtatcaatctcagacatcttt-ccttatgcatagacttcgatgacttgaagaaaattttgg |
3362576 |
T |
|
| Q |
100 |
ctgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttcttt |
190 |
Q |
| |
|
||||||| || || ||| |||||| |||||||||| | |||| | ||| ||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
3362577 |
ctgctctttgcttgctcaaaagctcacctaatcttcgaaaattggaaataattgtgag---tactcgtttagtttggcttgactttgcttt |
3362664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3342012 - 3342107
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaattt |
96 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||| ||||||| | | || | | || ||||||||| ||||||||||| |||||| |
|
|
| T |
3342012 |
tggctgcaggtattgtgccagtaaagcttcctacaccttgtatcaatctaaaaatttttcgtgtaagcataaacttcaatgacttgaagaaaattt |
3342107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4322407 - 4322357
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaa |
51 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
4322407 |
tggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaa |
4322357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 6601100 - 6600985
Alignment:
| Q |
18 |
ccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactgctctatgtgtgttca |
117 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||| ||||||| | | |||||||||||||| | |||||||||||| ||||||| || | |||| |
|
|
| T |
6601100 |
ccagtaaagcttcctaccccttgcattgatctaagttatctttccatacgcataaacttctatgattcaaaggaaatttcagctgctctttgccttttca |
6601001 |
T |
|
| Q |
118 |
gaagctcccctaatct |
133 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
6601000 |
gaagctcacctaatct |
6600985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 21238241 - 21238437
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| | | | ||||||||| |||||||||||||||| || | |
|
|
| T |
21238241 |
tggctgcaggtgtcgttccagtaaagcttcctacaccttgtattcatctaagccatcttttgttaaacataaacttcaatgacttgaaggaaatctcggc |
21238340 |
T |
|
| Q |
101 |
tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgcttgctgat |
200 |
Q |
| |
|
|||||| || || |||||||||| |||||||| | | ||||||| |||| |||||| ||||| |||| ||||| || |||| |||||||||||||| |
|
|
| T |
21238341 |
tgctctctgcttgctcagaagctcacctaatctgcgaaaattaaaaatatctgtgag---tactcgtttaatttggttttgctttgctttgcttgctgat |
21238437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 20935195 - 20935390
Alignment:
| Q |
4 |
ctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactgc |
103 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||| |||||| |||||| | || ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
20935195 |
ctgcaggtgttttgccaaaaaagcttcctacaccttgtatggatctaagtcatctttccttgagcataaacttcgatgacttgaaggaaatttcggctgc |
20935294 |
T |
|
| Q |
104 |
tctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgcttgctgattt |
202 |
Q |
| |
|
||| || || |||||||||| |||||||||| | ||||| | ||||||||||| |||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
20935295 |
tctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgag---tactcatttagtttagcttggtttcactttgcttgctgattt |
20935390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 20953730 - 20953906
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggctta-gtataaacttctatgacttgaaggaaatttcaa |
99 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||||||| | || | ||||||||||| |
|
|
| T |
20953730 |
tggctgcaggtgttttgccagtaaagcttcctacaccttgtatttatctaagctatcttt-ccttatgcataaacttcgacaacctaaaggaaatttcgg |
20953828 |
T |
|
| Q |
100 |
ctgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttg |
180 |
Q |
| |
|
||||||| || || |||||||||| |||||||||| | ||||| | ||||||||||| |||||||||||||| ||||| |
|
|
| T |
20953829 |
ctgctctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgag---tactcatttagtttagcttg |
20953906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 20924191 - 20924349
Alignment:
| Q |
1 |
tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| | | |||||||| | ||||||| ||||||||| | |
|
|
| T |
20924191 |
tggctgcaggtgtggtgccagtaaagcttcctacactttgtattaatctaacatttctttccatatgcctaaacttcaacgacttgacggaaatttcggc |
20924290 |
T |
|
| Q |
101 |
tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagta |
159 |
Q |
| |
|
|| ||| || || ||| |||||| |||||||||||| ||| || || |||||||||| |
|
|
| T |
20924291 |
tgttctttgcttgctcaaaagctcgcctaatcttcaaacattcaaaatgtttgtgagta |
20924349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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