View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_high_4 (Length: 555)
Name: NF6855_high_4
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 35107102 - 35106739
Alignment:
| Q |
1 |
gctggctcaagatggagacaaacaatgataaacagaaaaaatcatagagaacaaggaaatgaaatagaaggtttttatgggggaatcagaaagttgcata |
100 |
Q |
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| T |
35107102 |
gctggctcaagatggagacaaacaatgataaacagaaaaaatcatagagaacaaggaaatgaaatagaaggtttttatgggggaatcagaaagttgcata |
35107003 |
T |
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| Q |
101 |
gcaaggaggagattacaaagtggaagaaactttggccaacaaaaaatgttgaatagtatgattaattaaataactttagaactttgtaaataaactagtc |
200 |
Q |
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| T |
35107002 |
gcaaggaggagattacaaagtggaagaaactttggccaacaaaaaatgttgaatagcatg----attaaataactttagaactttgtaaataaactagtt |
35106907 |
T |
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| Q |
201 |
tacattcctaaaatgtgaatgtaaaggcttaaaggattagtttttgtcaaagactgatgtcactcattcctaactataggtctaaattggaaaatttaca |
300 |
Q |
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| T |
35106906 |
tacattcctaaaatgtgaatgtaaaggcataaaggattagtttttgtcaaagaatgatgtcactcattcctaactataggtctaaattggaaaatttaca |
35106807 |
T |
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| Q |
301 |
ttggatgaatttttcagtttttatgtaacgcgtaccactacataagcaatagtgtacatgttactgtta |
369 |
Q |
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| T |
35106806 |
ttggatgaatttttcagttttaaagtaacgtgtaccactacataagc-atagtgtatatgttactgtta |
35106739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 453 - 515
Target Start/End: Complemental strand, 35106697 - 35106635
Alignment:
| Q |
453 |
caagacaatgctaagtggtgagggaaattggctattcagttcacacttgtgcttataaattaa |
515 |
Q |
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| T |
35106697 |
caagacaatgctaagtggtgagggaaattggctattcagttcacacttgtgcttataaattaa |
35106635 |
T |
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