View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_high_6 (Length: 474)

Name: NF6855_high_6
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_high_6
NF6855_high_6
[»] chr6 (5 HSPs)
chr6 (154-471)||(6954839-6955156)
chr6 (98-448)||(6948223-6948576)
chr6 (24-464)||(6921677-6922120)
chr6 (66-465)||(6935532-6935940)
chr6 (318-465)||(6943268-6943415)
[»] chr7 (11 HSPs)
chr7 (98-471)||(1986278-1986654)
chr7 (114-448)||(15572253-15572590)
chr7 (318-471)||(13417237-13417389)
chr7 (311-356)||(12820321-12820366)
chr7 (219-281)||(13417435-13417497)
chr7 (402-440)||(19351408-19351446)
chr7 (413-442)||(9807519-9807548)
chr7 (321-362)||(14076377-14076418)
chr7 (321-362)||(14386405-14386446)
chr7 (413-454)||(29859125-29859166)
chr7 (226-274)||(18515367-18515415)
[»] scaffold0024 (1 HSPs)
scaffold0024 (6-152)||(161194-161340)
[»] chr1 (1 HSPs)
chr1 (404-454)||(39379419-39379469)
[»] chr5 (1 HSPs)
chr5 (321-362)||(18965274-18965315)


Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 154 - 471
Target Start/End: Complemental strand, 6955156 - 6954839
Alignment:
Q  154 ttcttggttcatgtaatgggttggtctgcatgcaagattgttctttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggac 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6955156 ttcttggttcatgtaatgggttggtctgcatgcaagattgttctttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggac 6955057  T
Q  254 aaagtctgaagcattagtgtcttttcgcaattatgccaaggagaaaaataactgcaagttcgcatttggttatgataattcaacagacacttacaagatg 353  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6955056 aaagtctgaagcattattgtcttttcgcaattatgccaaggagaaaaataactgcaagttcgcgtttggttatgataattcaacagacacttacaagatg 6954957  T
Q  354 gtgttgttatgtttgaaaagggatggtgagtttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttcccgg 453  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954956 gtgttgttatgtttgaaaagggatggtgagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttcccgg 6954857  T
Q  454 tggaattggtgtatcatc 471  Q
    ||||||||||||||||||    
T  6954856 tggaattggtgtatcatc 6954839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 98 - 448
Target Start/End: Complemental strand, 6948576 - 6948223
Alignment:
Q  98 ttctatcacccttactgatcctttccaccaattcaattacaaggacgccggtgacattcttggttcatgtaatgggttggtctgcatgcaagattgttct 197  Q
    |||| |||||||||| ||||||| ||||||||||  |||||||||||| |||    || |||||||||| ||||| ||||||||||| ||||||| ||||    
T  6948576 ttctctcacccttaccgatccttaccaccaattcccttacaaggacgctggtagggttgttggttcatgcaatggattggtctgcatacaagattcttct 6948477  T
Q  198 ttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggacaaagtctgaagcattagtgtcttttcgcaattatgccaag---g 294  Q
    ||||| ||||| ||||| || ||||| |||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||| ||| || ||        
T  6948476 ttcaccgctgagtatcatgaacactcattctctttttggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccgagccca 6948377  T
Q  295 agaaaaataactgcaagttcgcatttggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatggtgagtttattgcaac 394  Q
    |||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||| |||||| |||||| ||  ||| | ||||    
T  6948376 agaaaaatatttgcaagttcgcctttggttatgataattcaatagacacttacaaggttgtgttgttatgtatgaaaatggatggcgaacttaatacaac 6948277  T
Q  395 cacggttaaagtttttactttgggtgataatgtttggagagatattgattgttt 448  Q
    | |||||||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  6948276 cgcggttaaactttttactttgggtgataatgattggagagaaattgattgttt 6948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 24 - 464
Target Start/End: Complemental strand, 6922120 - 6921677
Alignment:
Q  24 ctctcaaacaagtttgaaggttctggtgattgtatggctgcacccatctctcgtttgatggagtgttcttcgagttctatcacccttactgatcctttcc 123  Q
    |||||||||| || ||||||||| || || |||| ||| |  ||||||||||||||| ||||| ||   ||   |||||| |||||||| ||||| | ||    
T  6922120 ctctcaaacatgtctgaaggttcgggagaatgtagggcagtgcccatctctcgtttgctggagagtaactcacattctataacccttaccgatccatacc 6922021  T
Q  124 accaattcaattacaaggacgccggtgacattcttggttcatgtaatgggttggtctgcatgcaagattgttctttcactgctgaatatcaggagcactc 223  Q
    ||||||||  ||||||||| || |||    || |||||||||| ||||| |||||||||||||||||||||| ||||   || || ||||| || |||||    
T  6922020 accaattcttttacaaggatgctggtagggttgttggttcatgcaatggattggtctgcatgcaagattgttatttc---gcggagtatcacgaacactc 6921924  T
Q  224 gttctctttttggaaccctgccacaaggacaaagtctgaagcattagtgtcttttcgcaattatgccaag---gagaaaaataactgcaagttcgcattt 320  Q
    ||||||||| ||||| ||||||||||||||||| |||||| |||| |||||||||||||| ||| |||||     |||||||   ||||| ||| |||||    
T  6921923 gttctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacattt 6921824  T
Q  321 ggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatg---gtgagtttattgcaaccacggttaaagtttttactttgg 417  Q
    |||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||   | ||  ||||||||||  | || | ||||||||||||||    
T  6921823 ggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggccgtaagagtttttactttgg 6921724  T
Q  418 gtgataatgtttggagagatattgattgtttcccggtggaattggtg 464  Q
    ||||||||| ||||||||| ||||||||||| || |||| |||||||    
T  6921723 gtgataatgattggagagacattgattgtttgcctgtggtattggtg 6921677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 66 - 465
Target Start/End: Complemental strand, 6935940 - 6935532
Alignment:
Q  66 cccatctctcgtttgatggagtgttcttcgagttctatcacccttactgatcctttccaccaattcaattacaaggacgccggtgacattcttggttcat 165  Q
    ||||||||| ||||||||||| || |||||| ||||||||||||| | |  |||| | |||||||| ||||||||||||| |||   ||| |||||||||    
T  6935940 cccatctctagtttgatggagggtacttcgaattctatcacccttgccgtcccttccaaccaattctattacaaggacgctggtaggattgttggttcat 6935841  T
Q  166 gtaatgggttggtctgcatgcaagattgttctttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggacaaagtctgaagc 265  Q
    | ||||| ||||||||||| ||||||||||||||||| ||||| |||   |||||  | |||||||||||||||   |||||||||||||| || |||||    
T  6935840 gcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctctttttggaacttcgccacaaggacaaaatccgaagc 6935741  T
Q  266 attagtgtcttttcgcaattatgccaag---gagaaaaata------actgcaagttcgcatttggttatgataattcaacagacacttacaagatggtg 356  Q
    ||| ||||||||||||| | || ||| |    | |||||||        ||||| ||| | ||||||||||||||||||||||||||||||||| |||||    
T  6935740 attggtgtcttttcgcagtaatcccacgctcaataaaaatataaatgtttgcaacttcacttttggttatgataattcaacagacacttacaagttggtg 6935641  T
Q  357 ttgttatgtttgaaaagggatggtgagtttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttcccggtgg 456  Q
    || ||  ||||| ||||||| |  ||  ||||   ||||  | | | ||||||||||||||||||||||| ||||||||| ||||||||||| |  ||||    
T  6935640 ttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtttttactttgggtgataatgattggagagacattgattgtttgcaagtgg 6935541  T
Q  457 aattggtgt 465  Q
     ||||||||    
T  6935540 cattggtgt 6935532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 465
Target Start/End: Complemental strand, 6943415 - 6943268
Alignment:
Q  318 tttggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatggtgagtttattgcaaccacggttaaagtttttactttgg 417  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||  ||| | ||||||  |  ||  ||||   ||||  ||| | ||||||||||||||    
T  6943415 tttggttatgataattcaacaaacacttacaagttggtgttgttcagttcggaaagggtcgacgaccttatgaaaaccgtggtaagagtttttactttgg 6943316  T
Q  418 gtgataatgtttggagagatattgattgtttcccggtggaattggtgt 465  Q
    ||||||||| ||||||||| ||||||||||| |  |||| ||||||||    
T  6943315 gtgataatgattggagagacattgattgtttgcatgtggcattggtgt 6943268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 98 - 471
Target Start/End: Complemental strand, 1986654 - 1986278
Alignment:
Q  98 ttctatcacccttactgatcctttccaccaattcaattacaaggacgccggtgacattcttggttcatgtaatgggttggtctgcatgcaagattgttct 197  Q
    ||||||||||||||| ||||||| ||||||||||  |||||||||||| |||    || |||||||||| ||||| |||||||| || ||||||||||||    
T  1986654 ttctatcacccttaccgatccttaccaccaattcttttacaaggacgctggtagggttgttggttcatgcaatggattggtctgtattcaagattgttct 1986555  T
Q  198 ttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggacaaagtctgaagcattagtgtcttttcgcaattatgccaagg--- 294  Q
    ||||||||||| |||||  | |||||||||||||||||||| ||| ||||||||||||| | ||||||||| |||||||||||||| ||| |||||        
T  1986554 ttcactgctgagtatcacaaacactcgttctctttttggaatccttccacaaggacaaaatatgaagcattggtgtcttttcgcaactatcccaagccca 1986455  T
Q  295 agaaaaataactgcaagttcgcatttggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatggtgagtttattgcaac 394  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | ||| ||||    
T  1986454 agaaaaatatttgcaagttcgcgtttggttatgataattcaacagacacttacaagattttgttgttatgtttgaaaagggatggtgagctgattacaac 1986355  T
Q  395 cacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttcccggtggaattggtgtatcatc 471  Q
    | | || | |||||||||||||||| |||||| ||||||||| ||||||||||| || |||| | |||||| |||||    
T  1986354 cgccgtaagagtttttactttgggttataatgattggagagaaattgattgtttgcctgtggtagtggtgtgtcatc 1986278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 114 - 448
Target Start/End: Complemental strand, 15572590 - 15572253
Alignment:
Q  114 gatcctttccaccaattcaattacaaggacgccggtgacattcttggttcatgtaatgggttggtctgcatgcaagattgttctttcactgctgaatatc 213  Q
    ||||||| ||||  |||||||| ||||||||  ||||   || |||||||||| ||||| ||||||||| |||||  |||||||||| ||||||| |||     
T  15572590 gatccttaccactgattcaatttcaaggacggtggtggggttgttggttcatgcaatggattggtctgcttgcaaagttgttctttcgctgctgagtata 15572491  T
Q  214 aggagcactcgttctctttttggaaccctgccacaaggacaaagtctgaagcattagtgtcttttcgcaattatgccaaggagaaaaataactgcaagtt 313  Q
      ||  |||| |||| ||| |||||||| |||||||||| ||| |||||| ||||||| |||||  || |||||  ||| ||  | ||||   | |||||    
T  15572490 ccgactactccttctgtttctggaaccccgccacaaggaaaaaatctgaaacattagtctctttaagctattatcacaaagactataatattggtaagtt 15572391  T
Q  314 cgcatttggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatggt---gagtttattgcaaccacggttaaagttttt 410  Q
     ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||   ||  ||||| || ||  ||| | ||| |||    
T  15572390 tgcatttggttatgataattcaaccgacacttacaaggtggtgttgttatgttggaaaagggatggtggcgacgttattacatccgtggtaagagtattt 15572291  T
Q  411 actttgggtgataatgtttggagagatattgattgttt 448  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15572290 actttgggtgataacgtttggagagatattgattgttt 15572253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 471
Target Start/End: Complemental strand, 13417389 - 13417237
Alignment:
Q  318 tttggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatggtgagt-ttattgcaaccacggttaaagtttttactttg 416  Q
    |||||||||||||||||||| |||||||||||| ||||||  ||  |||||||||  || ||  ||  ||||  || || |||| ||||||| || || |    
T  13417389 tttggttatgataattcaacggacacttacaaggtggtgtcatttggtttgaaaattga-ggacagccttatgacatcctcggtaaaagtttgtagtt-g 13417292  T
Q  417 ggtgataatgtttggagagatattgattgtttcccggtggaattggtgtatcatc 471  Q
    ||||| |||||||||||| ||||||||| |||||| ||| |||||||||||||||    
T  13417291 ggtgaaaatgtttggagaaatattgattatttccctgtgcaattggtgtatcatc 13417237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 12820366 - 12820321
Alignment:
Q  311 gttcgcatttggttatgataattcaacagacacttacaagatggtg 356  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||    
T  12820366 gttcacatttggttatgataattcaactgacacttacaaggtggtg 12820321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 13417497 - 13417435
Alignment:
Q  219 cactcgttctctttttggaaccctgccacaaggacaaagtctgaagcattagtgtcttttcgc 281  Q
    |||||||||||||| |||||||| ||||||||||  |  |||||| ||||| |||||||||||    
T  13417497 cactcgttctctttctggaacccagccacaaggaatatatctgaaacattaatgtcttttcgc 13417435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 19351446 - 19351408
Alignment:
Q  402 aaagtttttactttgggtgataatgtttggagagatatt 440  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  19351446 aaagtttttagtttgagtgataatgtttggagagatatt 19351408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 9807519 - 9807548
Alignment:
Q  413 tttgggtgataatgtttggagagatattga 442  Q
    ||||||||||||||||||||||||||||||    
T  9807519 tttgggtgataatgtttggagagatattga 9807548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 14076377 - 14076418
Alignment:
Q  321 ggttatgataattcaacagacacttacaagatggtgttgtta 362  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  14076377 ggttacgataattcaacagacacctacaagatggtgatgtta 14076418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 14386405 - 14386446
Alignment:
Q  321 ggttatgataattcaacagacacttacaagatggtgttgtta 362  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  14386405 ggttacgataattcaacagacacctacaagatggtgatgtta 14386446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Original strand, 29859125 - 29859166
Alignment:
Q  413 tttgggtgataatgtttggagagatattgattgtttcccggt 454  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  29859125 tttgggtgataacgtttggagagatattgaaagtttcccggt 29859166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 18515415 - 18515367
Alignment:
Q  226 tctctttttggaaccctgccacaaggacaaagtctgaagcattagtgtc 274  Q
    ||||||| |||||||||||||||||||| || |||||  ||||||||||    
T  18515415 tctctttctggaaccctgccacaaggactaaatctgatacattagtgtc 18515367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 161194 - 161340
Alignment:
Q  6 atgacacacctcgcttttctctcaaacaagtttgaaggttctggtgattgtatggctgcacccatctctcgtttgatggagtgttcttcgagttctatca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  161194 atgacacacctcgcttttctctcaaacaagtttgaaggttctggtgattgtatggctgcacccatctctcgtttgatggagtgttcttcgagttctatca 161293  T
Q  106 cccttactgatcctttccaccaattcaattacaaggacgccggtgac 152  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  161294 cccttactgatccttaccaccaattcaattacaaggacgccggtgac 161340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 39379469 - 39379419
Alignment:
Q  404 agtttttactttgggtgataatgtttggagagatattgattgtttcccggt 454  Q
    |||||| | |||||||||||||||||||||| |||||||  ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttcccggt 39379419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 18965315 - 18965274
Alignment:
Q  321 ggttatgataattcaacagacacttacaagatggtgttgtta 362  Q
    |||||||||||||||||| |||| |||||||||||| |||||    
T  18965315 ggttatgataattcaacacacacctacaagatggtgatgtta 18965274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University