View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_high_7 (Length: 471)

Name: NF6855_high_7
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_high_7
NF6855_high_7
[»] chr6 (4 HSPs)
chr6 (11-470)||(34723484-34723943)
chr6 (11-470)||(34602208-34602666)
chr6 (69-239)||(2542169-2542339)
chr6 (28-98)||(32199375-32199445)
[»] scaffold0156 (1 HSPs)
scaffold0156 (248-457)||(17201-17410)
[»] chr4 (5 HSPs)
chr4 (25-137)||(13155359-13155471)
chr4 (24-98)||(8811484-8811558)
chr4 (24-66)||(33099472-33099514)
chr4 (178-236)||(12777430-12777488)
chr4 (24-98)||(54873382-54873456)
[»] chr7 (2 HSPs)
chr7 (25-160)||(27852279-27852414)
chr7 (23-94)||(8773012-8773083)
[»] chr5 (3 HSPs)
chr5 (175-237)||(8251172-8251234)
chr5 (350-456)||(22663407-22663513)
chr5 (23-101)||(38359635-38359713)
[»] chr2 (4 HSPs)
chr2 (23-94)||(28398451-28398522)
chr2 (298-366)||(575318-575386)
chr2 (296-333)||(178395-178432)
chr2 (69-137)||(24737237-24737305)
[»] chr1 (4 HSPs)
chr1 (24-95)||(25527584-25527655)
chr1 (350-456)||(39227255-39227361)
chr1 (295-381)||(31324115-31324201)
chr1 (175-239)||(25527440-25527504)
[»] chr3 (2 HSPs)
chr3 (24-94)||(6891666-6891736)
chr3 (24-98)||(6923424-6923498)
[»] scaffold0225 (1 HSPs)
scaffold0225 (73-130)||(3942-3999)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 34723484 - 34723943
Alignment:
Q  11 tggacatcacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723484 tggacataacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 34723583  T
Q  111 tgaaaacaactcctcagaaaaaccatgaaggtcttcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723584 tgaaaacaactcctcagaaaaaccatgaaggtcctcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 34723683  T
Q  211 aaagacaaaatttttgcaggtaaattttgtgtatgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723684 aaagacaaaatttttgcaggtaaattttgtgtatgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccct 34723783  T
Q  311 atttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723784 atttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtg 34723883  T
Q  411 attttggcattcttggatctcaaatccccatcatagacatccatgatgtccatctcattg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  34723884 attttggcattcttggatctcaaatccccatcatagacatccatgatcttcatctcattg 34723943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 34602208 - 34602666
Alignment:
Q  11 tggacatcacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602208 tggacataacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 34602307  T
Q  111 tgaaaacaactcctcagaaaaaccatgaaggtcttcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602308 tgaaaacaactcctcagaaaaaccatgaaggtcctcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 34602407  T
Q  211 aaagacaaaatttttgcaggtaaattttgtgtatgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccct 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602408 aaagacaaaatttttgcaggtaaattttgtg-atgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccct 34602506  T
Q  311 atttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602507 atttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtg 34602606  T
Q  411 attttggcattcttggatctcaaatccccatcatagacatccatgatgtccatctcattg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  34602607 attttggcattcttggatctcaaatccccatcatagacatccatgatcttcatctcattg 34602666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 2542169 - 2542339
Alignment:
Q  69 cctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcctcagaaaaaccatgaaggtcttcgacctcctcctccagtaaatca 168  Q
    |||||| ||||||||||||||||||  ||| |  || ||||| || |||||||||||| | || |||||||| || || |||||||| ||   |||| |     
T  2542169 cctcgactgttgccaacaaatactattatttatccgagataaagagaacaactcctcatataacccatgaagctcctcaacctcctcatcatctaaaact 2542268  T
Q  169 actgattcaccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaattttg 239  Q
     | || || ||||| | ||||| ||||| ||||||||| |||| ||||||||||||||| |||||||||||    
T  2542269 gcagactctcctttcatatcaaaagctgtaattttatccttcatagacaaaatttttgctggtaaattttg 2542339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 32199375 - 32199445
Alignment:
Q  28 aaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 98  Q
    |||||||| ||||||||||| | ||| | ||||||||| || || || |||||||||||||||||||||||    
T  32199375 aaaaacttcgaatttgcatctccttccctcaaccattgaattctggactgttgccaacaaatactagaatt 32199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 248 - 457
Target Start/End: Complemental strand, 17410 - 17201
Alignment:
Q  248 tctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtcttccatcatccgtgctaaagagattctaa 347  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||    
T  17410 tctgataaatatacttcagggccgaacatttttcatgcatatgttaacagcagaagctcccctatttggtcttccatcattcgtgctaaagagattctaa 17311  T
Q  348 aaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttggatctcaaatccccatcataga 447  Q
    |||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17310 aaaatggctattcttggcacgtagggtctggctattcttctttttggttcaacctttggagtgattttggcattcttggatctcaaatccccatcataga 17211  T
Q  448 catccatgat 457  Q
    ||||||||||    
T  17210 catccatgat 17201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 13155471 - 13155359
Alignment:
Q  25 tgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcct 124  Q
    ||||| ||||| | ||| ||||||| |||||| |||||||||||||  || ||||||||||||||||||||||| |   | || || |||||||||||||    
T  13155471 tgaaagaacttagtattcgcatccccttcacgtaaccattgcatccgagactgttgccaacaaatactagaatttatctgagacaacgaaaacaactcct 13155372  T
Q  125 cagaaaaaccatg 137  Q
    | |||| ||||||    
T  13155371 cggaaacaccatg 13155359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 8811558 - 8811484
Alignment:
Q  24 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 98  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||  |  || ||||||||||||||||| |||||    
T  8811558 atgaaaaaactttgaattggcatccccttcacgcaaccactgcaatcgagactgttgccaacaaatacttgaatt 8811484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 33099514 - 33099472
Alignment:
Q  24 atgaaaaaacttggaatttgcatccctttcacgcaaccattgc 66  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  33099514 atgaaaaaacttggaattcgcatccctttcacgtaaccattgc 33099472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 12777430 - 12777488
Alignment:
Q  178 ccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaatt 236  Q
    ||||| |||||||  || ||||||||||| |||| ||||||| ||||||||||||||||    
T  12777430 cctttgaaatcaaaggccgaaattttatccttcagagacaaattttttgcaggtaaatt 12777488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 54873382 - 54873456
Alignment:
Q  24 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 98  Q
    |||||| || || ||||| ||||||| |||||  ||||||||||  |  ||||||||||||||||||||||||||    
T  54873382 atgaaagaatttagaattagcatccccttcacataaccattgcagacgagattgttgccaacaaatactagaatt 54873456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 27852414 - 27852279
Alignment:
Q  25 tgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcct 124  Q
    ||||| ||||| || |||||||| | |||||| |||||||| | || ||| ||||||||||||||||| ||||| |  || ||||| ||||| |||||||    
T  27852414 tgaaagaacttagagtttgcatctccttcacgtaaccattgtaaccgcgactgttgccaacaaatacttgaattaatccgagataacgaaaataactcct 27852315  T
Q  125 cagaaaaaccatgaaggtcttcgacctcctcctcca 160  Q
    | ||||| | ||| |  ||||||| |||||||||||    
T  27852314 ctgaaaacctatgcatatcttcgatctcctcctcca 27852279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 8773012 - 8773083
Alignment:
Q  23 aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag 94  Q
    |||||||| |||| ||||||||||| | |||||| | || |||  ||||||||||||||||||| |||||||    
T  8773012 aatgaaaatacttagaatttgcatcgccttcacgaagcctttgattcctcgattgttgccaacatatactag 8773083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 8251172 - 8251234
Alignment:
Q  175 tcaccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaattt 237  Q
    ||||| || ||||||| || |||||||||||| ||||| ||||||||||||||||||||||||    
T  8251172 tcacccttcaaatcaaaagatgaaattttatcattcaacgacaaaatttttgcaggtaaattt 8251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 22663513 - 22663407
Alignment:
Q  350 aatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttggatctcaaatccccatcatagaca 449  Q
    ||||||||||||||||| | ||| ||||| ||||| || || |||||||||| ||||||||  |||||    || ||| |||||||||||||||||||||    
T  22663513 aatggctattcttggcgagcaggttctggttcttcatcgttttggttcagccattggagtggctttggatgcctcggagctcaaatccccatcatagaca 22663414  T
Q  450 tccatga 456  Q
    | |||||    
T  22663413 tacatga 22663407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 38359635 - 38359713
Alignment:
Q  23 aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaa 101  Q
    |||||||| | || ||||||||||| | |||||  | ||||||  ||||||||||||||||||| ||||||| ||||||    
T  38359635 aatgaaaatatttagaatttgcatcgccttcactaagccattgattcctcgattgttgccaacatatactagtattcaa 38359713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 28398522 - 28398451
Alignment:
Q  23 aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag 94  Q
    |||||||| |||| ||||||||||| | |||||| | ||||||  ||||||||||||||||||| |||||||    
T  28398522 aatgaaaatacttagaatttgcatcgccttcacgaagccattgattcctcgattgttgccaacatatactag 28398451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 575318 - 575386
Alignment:
Q  298 cagcagttcccctatttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcg 366  Q
    ||||||||| || | |||||| || ||||| ||||||||||| ||||| |||||||| |||||||||||    
T  575318 cagcagttcacccacttggtcatctatcatacgtgctaaagatattctcaaaaatggttattcttggcg 575386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 178395 - 178432
Alignment:
Q  296 agcagcagttcccctatttggtcttccatcatccgtgc 333  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  178395 agcagcagctcccctatttggtcctccatcatccgtgc 178432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 24737305 - 24737237
Alignment:
Q  69 cctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcctcagaaaaaccatg 137  Q
    |||||| || |||||||||||||||||||| |  || ||||| ||||| |||||||| ||||| |||||    
T  24737305 cctcgactgctgccaacaaatactagaattaatccgagataacgaaaataactcctctgaaaacccatg 24737237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 25527655 - 25527584
Alignment:
Q  24 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactaga 95  Q
    |||||||||||| |||||||| |||| |||||| ||||||||||| || || ||||||||||  ||||||||    
T  25527655 atgaaaaaactttgaatttgcttccccttcacgtaaccattgcattcttgactgttgccaacggatactaga 25527584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 39227361 - 39227255
Alignment:
Q  350 aatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttggatctcaaatccccatcatagaca 449  Q
    ||||||||||||||||| | ||| ||||| ||||| || || |||||||||| ||||||||  || |||   || ||| |||||| ||||||||||||||    
T  39227361 aatggctattcttggcgagcaggttctggttcttcatcgttttggttcagccattggagtggcttcggctgcctcggagctcaaacccccatcatagaca 39227262  T
Q  450 tccatga 456  Q
    | |||||    
T  39227261 tacatga 39227255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 381
Target Start/End: Complemental strand, 31324201 - 31324115
Alignment:
Q  295 cagcagcagttcccctatttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctc 381  Q
    ||||||||| ||||||  |||| | |||||||| ||||| |||||  |||| |||||||| || ||||||||||| ||||| |||||    
T  31324201 cagcagcagctccccttcttgggcatccatcattcgtgccaaagatgttcttaaaaatgggtactcttggcgcgtcgggtcgggctc 31324115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 25527504 - 25527440
Alignment:
Q  175 tcaccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaattttg 239  Q
    |||||||| | |||||| ||| ||||| |||| ||||||||  | ||||||||||||||||||||    
T  25527504 tcacctttaagatcaattgctaaaattctatccttcaaagatgatatttttgcaggtaaattttg 25527440  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 6891736 - 6891666
Alignment:
Q  24 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag 94  Q
    ||||||||| |||||||| ||||||| |||||| |||||| |   ||  ||||||||||||||||||||||    
T  6891736 atgaaaaaaattggaattcgcatccccttcacgtaaccatcgatgccgggattgttgccaacaaatactag 6891666  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 6923498 - 6923424
Alignment:
Q  24 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 98  Q
    |||||| || || ||||||||| ||| |||||  ||||||||||  |  ||||||||||||||||||||||||||    
T  6923498 atgaaagaaatttgaatttgcacccccttcacataaccattgcagacgtgattgttgccaacaaatactagaatt 6923424  T

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Target: scaffold0225 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 3999 - 3942
Alignment:
Q  73 gattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcctcagaaa 130  Q
    |||||||||||||||| ||||| |||||  || ||||| |||||||||||||| ||||    
T  3999 gattgttgccaacaaacactagcattcacacgagataacgaaaacaactcctctgaaa 3942  T

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