View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_low_15 (Length: 445)

Name: NF6855_low_15
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_low_15
NF6855_low_15
[»] chr5 (1 HSPs)
chr5 (15-439)||(39252497-39252911)
[»] chr1 (3 HSPs)
chr1 (108-161)||(35201495-35201548)
chr1 (108-161)||(35202375-35202428)
chr1 (113-161)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (110-164)||(47007765-47007819)
chr3 (110-161)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (119-163)||(29308399-29308443)
chr2 (119-163)||(29309102-29309146)
chr2 (108-163)||(4161336-4161390)
chr2 (119-163)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (108-161)||(33520893-33520946)
chr8 (119-161)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (108-163)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (119-161)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Original strand, 39252497 - 39252911
Alignment:
Q  15 catcacgtgaaagtcagattatgagggagtattattattagagaaagttagagtttaattccgataggctaatgtgtaaactgccttacgctgttatgaa 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252497 catcacgtgaaagtcagattatgagggagtattactattagagaaagttagagtttaattccgataggctaatgtgtaaactgccttacgctgttatgaa 39252596  T
Q  115 aggtaattgagatggccatttcctccctaaatggagaggatctgcactcaatgaggagatagtcaacccataaaaataggaaatatctatgttttaattt 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252597 aggtaattgagatggccatttcctcccaaaatggagaggatctgcactcaatgaggagatagtcaacccataaaaataggaaatatctatgttttaattt 39252696  T
Q  215 aggggcgtctatataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagat 314  Q
    |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252697 a----------tataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagat 39252786  T
Q  315 catcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagaggagttataggaatgcatcttgaaattccacaacgcag 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39252787 catcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagaggagttatgggaatgcatcttgaaattccacaacgcag 39252886  T
Q  415 acaatcacactttgatgtccatctc 439  Q
    ||||||||||||||| |||| ||||    
T  39252887 acaatcacactttgaagtccgtctc 39252911  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 35201548 - 35201495
Alignment:
Q  108 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 161  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  35201548 ttatgaaaggaaattgagatggccatttactccccaaatggagaggatctgcac 35201495  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 35202375 - 35202428
Alignment:
Q  108 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 161  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  35202375 ttatgaaaggaaattgagatggccatttcctcaccaaatggagaggatctgcac 35202428  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 37643843 - 37643891
Alignment:
Q  113 aaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 161  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  37643843 aaaggaaattgagattgtcattttctccctaaatggagaggatatgcac 37643891  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 47007765 - 47007819
Alignment:
Q  110 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactca 164  Q
    ||||| || ||||||||| || |||||||||||||||||||||||||||||||||    
T  47007765 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcactca 47007819  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 47007074 - 47007023
Alignment:
Q  110 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 161  Q
    ||||| || ||||||||| || ||||||||||||||||||||||||||||||    
T  47007074 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcac 47007023  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 29308399 - 29308443
Alignment:
Q  119 aattgagatggccatttcctccctaaatggagaggatctgcactc 163  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29308399 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29308443  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 29309146 - 29309102
Alignment:
Q  119 aattgagatggccatttcctccctaaatggagaggatctgcactc 163  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29309146 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29309102  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 4161336 - 4161390
Alignment:
Q  108 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 163  Q
    |||||||||| ||||||||| || ||||| |||| |||||||||||||||||||||    
T  4161336 ttatgaaaggaaattgagattgcaatttc-tccccaaatggagaggatctgcactc 4161390  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 29283910 - 29283954
Alignment:
Q  119 aattgagatggccatttcctccctaaatggagaggatctgcactc 163  Q
    |||| |||| || |||||||||||||||||||||||||| |||||    
T  29283910 aatttagattgcaatttcctccctaaatggagaggatctacactc 29283954  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 33520893 - 33520946
Alignment:
Q  108 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 161  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||||||||||||    
T  33520893 ttattaaaggaaattgtgatggccatttcctcaccaaatggagaggatctgcac 33520946  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 33520258 - 33520216
Alignment:
Q  119 aattgagatggccatttcctccctaaatggagaggatctgcac 161  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  33520258 aattgagatggccatttcctcataaaatggagaggatctgcac 33520216  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 4275125 - 4275070
Alignment:
Q  108 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 163  Q
    ||||||| || ||||||||| ||||||| || ||||||||||||||||||| ||||    
T  4275125 ttatgaatggaaattgagattgccattttctacctaaatggagaggatctgtactc 4275070  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 1667 - 1625
Alignment:
Q  119 aattgagatggccatttcctccctaaatggagaggatctgcac 161  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  1667 aattgagatggccatttcctcataaaatggagaggatctgcac 1625  T

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