View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_17 (Length: 432)
Name: NF6855_low_17
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 169 - 418
Target Start/End: Original strand, 9867821 - 9868070
Alignment:
| Q |
169 |
acattcgcaaaaaactagtcgattgtggtttgcctttagtagcgatcttagtggtaattggatcacactgtctagaaaagttttattcacgtggaattta |
268 |
Q |
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| T |
9867821 |
acattcgcaaaagactagtcgactgtggtttgcctttagtagcgatcgtagtggtaattggatcacaccatctagaaaagttttattaacgtggaattta |
9867920 |
T |
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| Q |
269 |
gtcatgcatggctaaacaaatatgactcaatcatcatattcacgatgcatgacgaaatcatgatcaaagagagactggcgtcgcttctttatatttcacc |
368 |
Q |
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| T |
9867921 |
gtcatgcatggctaaacaaatatgattcaatcatcatattcacgatgcatggcgaaatcatgatcaaagagagactggcgtcgcttccttatatttcacc |
9868020 |
T |
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| Q |
369 |
aatgttccaaagcaatttttgtatgttgaattaaggatagggtttgatgt |
418 |
Q |
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| T |
9868021 |
aatgttccaaagcaatttttgtatgttgaattaaggaaagggtttgatgt |
9868070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 9867606 - 9867765
Alignment:
| Q |
13 |
gacatcatgggagcggaagggttccactaaccgtaggatataacgcggcnnnnnnnnnnatatgggtcatgggaggatgatcgacgacatgccaagtttc |
112 |
Q |
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| T |
9867606 |
gacatcatgggagcggaagggttccactaagggtgagatataacgtgggggaggggaggatatgggtcatgggaggatgatcgaggacatgccaagtttc |
9867705 |
T |
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| Q |
113 |
agagtttctcgcggcaannnnnnnaatcaacagtaatcaaagggttgaagactttaacat |
172 |
Q |
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| T |
9867706 |
agagtttctcgcggcaagggggagaatcaatagtcatcaaagggttgaagacttcaacat |
9867765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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