View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_21 (Length: 388)
Name: NF6855_low_21
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 32817698 - 32818065
Alignment:
| Q |
1 |
ttttcagttttctatgaaatcccatttaagttctacttcatggaacaccttcatttgggacatgctaaacaaggtttaaatggtggtgtcatgaaagtga |
100 |
Q |
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| T |
32817698 |
ttttcagttttctatgaaatcccatttaagttctacttcatggaacaccttcatttgggacatgctaaacaaggtttaaatggtggtgtcgtgaaagtga |
32817797 |
T |
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| Q |
101 |
tttatccaatactggaaccagatcttgtatcttggaacaacgtcattgctggccttgcggataatgctagtccatatgaaatgcaatttgtttcatgatg |
200 |
Q |
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| T |
32817798 |
tttatccaatactggaaccagatcttgtatcttggaacaacgtcattgctggccttgcggataatgctagtccatatgaaatgcaatttgtttcatgatg |
32817897 |
T |
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| Q |
201 |
cacatgaaagggcctaaaacttgcctcgtaaactcgttcaatctaggttataatacatacctgctattgccatgaggttttagtttcacatatcaatgtt |
300 |
Q |
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| T |
32817898 |
cacatgaaagggcctaaaacttgcctggtaaactcgttcaatctagcttataatacatacctgctattgccatgaggttttagtttcacat--------- |
32817988 |
T |
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| Q |
301 |
tgcattacccgacaaaagttgaagaggtaaattcaattgtactttcaatagtatttatactgcttgtgatttacaacatcttatt |
385 |
Q |
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| T |
32817989 |
--------ccgacaaaagttgaagaggtaaattcaattgtactttcaatagtatttatactgcttgtgatttacaacatcttatt |
32818065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 32815762 - 32815901
Alignment:
| Q |
33 |
ctacttcatggaacaccttcattt-gggacatgctaaacaaggtttaaatggtggtgtcatgaaagtgatttatccaatactggaaccagatcttgtatc |
131 |
Q |
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| T |
32815762 |
ctacttcatggaacacactcattttggggtatgcaaaacaaggtttgattgatgatgcgatgaaactgtttgataaaatgccggaaccggatattgtatc |
32815861 |
T |
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| Q |
132 |
ttggaacaacgtcattgctggccttgcggataatgctagt |
171 |
Q |
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| T |
32815862 |
ttggaacagcatcattgctggtcttgtagataatgctagt |
32815901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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