View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6855_low_22 (Length: 374)
Name: NF6855_low_22
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_22 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 1875284 - 1874926
Alignment:
| Q |
16 |
gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1875284 |
gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcaaaaaaatccaat |
1875185 |
T |
|
| Q |
116 |
ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1875184 |
ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta |
1875085 |
T |
|
| Q |
216 |
gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgactgaaggattactat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1875084 |
gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgatagaaggattactat |
1874985 |
T |
|
| Q |
316 |
ccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacctgtgat |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1874984 |
ccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacctgtgat |
1874926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 1885515 - 1885363
Alignment:
| Q |
41 |
cgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaatggtaaggcgctatgtagtggaaatt |
140 |
Q |
| |
|
||||| || |||| ||||||||||| || |||||| ||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||| |
|
|
| T |
1885515 |
cgataatcactaatgttaaacgtcacgaaaggattgtcatttagagaaccttgatcattat-aaaaatatccaattgtaaggcactctgtagtggaaatt |
1885417 |
T |
|
| Q |
141 |
gaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttctta |
194 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
1885416 |
gaaagagaaggtatggctgtttggctatcaccatattcttctgatcatttctta |
1885363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 1884232 - 1884150
Alignment:
| Q |
188 |
tttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg |
271 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884232 |
tttcttattatgagacttat-ttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg |
1884150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 374
Target Start/End: Complemental strand, 1884009 - 1883906
Alignment:
| Q |
267 |
ttttgttttctacaaatgcatgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattca |
366 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||| | |||||||||||||||||| | ||||||||||||| |
|
|
| T |
1884009 |
ttttgttttctacaaatgcat----tttcgtcgctagaaggaatactatccgtagagttattatttttgttgttctggtcatggacggttatgtcattca |
1883914 |
T |
|
| Q |
367 |
cctgtgat |
374 |
Q |
| |
|
|||||||| |
|
|
| T |
1883913 |
cctgtgat |
1883906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 3417914 - 3417815
Alignment:
| Q |
172 |
catattcttctgatcctttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg |
271 |
Q |
| |
|
||||||||||||||||||| ||| |||||| || ||||||||||| |||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
3417914 |
catattcttctgatccttttctatgatgagatttctcttttttagttgctcgtggtttttgattcactcccatgttagaagaccaatgcatattattttg |
3417815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 3417546 - 3417467
Alignment:
| Q |
286 |
atgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattc |
365 |
Q |
| |
|
|||||||||||||| | |||||| |||| || |||||||||||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
3417546 |
atgcattttcgtcgccagaaggaatactgtctgtagagctattattcttgttgttctggtcatgggcggctatgtcattc |
3417467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University