View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_low_24 (Length: 344)

Name: NF6855_low_24
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_low_24
NF6855_low_24
[»] chr1 (14 HSPs)
chr1 (12-344)||(2020831-2021165)
chr1 (12-266)||(2007774-2008028)
chr1 (53-219)||(3217176-3217342)
chr1 (53-198)||(3363965-3364110)
chr1 (53-125)||(3380264-3380336)
chr1 (53-167)||(3366390-3366504)
chr1 (56-128)||(2947210-2947282)
chr1 (53-196)||(3374067-3374210)
chr1 (59-128)||(3353406-3353475)
chr1 (53-127)||(3342702-3342776)
chr1 (59-108)||(1794138-1794187)
chr1 (40-149)||(4333563-4333672)
chr1 (260-321)||(2007658-2007720)
chr1 (53-149)||(6599659-6599755)
[»] chr2 (4 HSPs)
chr2 (40-204)||(20936082-20936246)
chr2 (53-204)||(20954323-20954474)
chr2 (53-198)||(20924478-20924623)
chr2 (40-197)||(39275231-39275388)
[»] chr4 (1 HSPs)
chr4 (53-108)||(21238958-21239013)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 2021165 - 2020831
Alignment:
Q  12 gacatcaacttagatccgacgttcaaatcaggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2021165 gacatcaacttagatccgacgttcaaatcaggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctt 2021066  T
Q  112 tcataccagagatgccttcaatcaacacatgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtgctaaaac 211  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2021065 tcataccagagatgccttcaatacacacatgtcacacttggatgggtatggatggctccaaaaagacattttcccaacaataggaggcaggtgctaaaac 2020966  T
Q  212 gacagtattctcctcctgtactgcctacatgaaattgtgccaaatccataaatcatattgtattgatcgatacaacatgaataggaagatacatgagtct 311  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2020965 gaccgtattctcctcctgtgctgcctacatgaaattgtgccaaatccataaatcatattgtattgattgatacaacatgaataggaagatacatgagtct 2020866  T
Q  312 gatt--tataggactctaatccaattaatcgtaac 344  Q
    ||||  |||||||||||||| |||| |||||||||    
T  2020865 gatttatataggactctaatgcaataaatcgtaac 2020831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 2008028 - 2007774
Alignment:
Q  12 gacatcaacttagatccgacgttcaaatcaggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctt 111  Q
    ||||||||||| ||||| ||||| ||||  |||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||    
T  2008028 gacatcaacttcgatccaacgttaaaattgggcttcactctcatcttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatt 2007929  T
Q  112 tcataccagagatgccttcaatcaacacatgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtgctaaaac 211  Q
    | || ||||||||||||||||||   |||||||||||| || || | ||||||||||||| ||||| || |||||| |||||| |||| |||||||||||    
T  2007928 tgatgccagagatgccttcaatccctacatgtcgcactcgggtgagcatggatggctccagaaagatatcttcccagcaaaagaaggcgggtgctaaaac 2007829  T
Q  212 gacagtattctcctcctgtactgcctacatgaaattgtgccaaatccataaatca 266  Q
    || ||| |||| ||| |||  |||||||||| ||||||  |||||| ||||||||    
T  2007828 gatagttttcttctcatgttttgcctacatgcaattgttacaaatctataaatca 2007774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 3217176 - 3217342
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 152  Q
    ||||||||||||||| || ||||| | |||||||||||| |||||||||||||||| | |  |  ||||||| ||||  ||   |||||| |||||| ||    
T  3217176 catcttttctagcatgggagaatacataagtagaaatctgataaaatctaattcagatgtattgtcagagattccttttatgctcacatggcgcactcgg 3217275  T
Q  153 atgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtgctaaaacgacagtat 219  Q
    | ||| | || ||||||||||||||||| || ||||||| ||||||| |||| ||||| | ||||||    
T  3217276 aggggcacgggtggctccaaaaagacatctttccaacaataggaggcgggtgttaaaaggtcagtat 3217342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 3364110 - 3363965
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 152  Q
    |||||||||||| | ||| ||||| | ||| |||||||| |||||||||||||||| ||| |  ||||||||||| |  |||  ||||||||||||||      
T  3364110 catcttttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagatttaaagccagagatgccatgcatcctcacatgtcgcacttca 3364011  T
Q  153 atgggtatggatggctccaaaaagacattttcccaacaaaaggagg 198  Q
    ||||| || | ||||||| |||| | ||||||||||||| ||||||    
T  3364010 atgggcattgttggctccgaaaatatattttcccaacaataggagg 3363965  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 3380336 - 3380264
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatg 125  Q
    |||||||||||||||||| ||||||||||||||||| |  |||||||||||||| | ||| ||||||||||||    
T  3380336 catcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatg 3380264  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 3366504 - 3366390
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 152  Q
    |||||| ||||||||||| |||||| |||||||||| |  |||||||||| ||| | ||| |||||||||||||| || ||   ||||||||||||| |     
T  3366504 catcttgtctagcataggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcgcactcga 3366405  T
Q  153 atgggtatggatggc 167  Q
    ||||| |||| ||||    
T  3366404 atgggcatggctggc 3366390  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 2947210 - 2947282
Alignment:
Q  56 cttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgcct 128  Q
    |||||||||||| || ||||  ||||| |||||||| |||||||||||||||| ||| |||||||| ||||||    
T  2947210 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 2947282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 3374210 - 3374067
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 152  Q
    |||||||||||||| ||| |||||  |||||||||| |  |||||||||||||| | | | |||||||||||||| || ||   ||||||| | |||||     
T  3374210 catcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgccatctattgtcacatgttgtacttga 3374111  T
Q  153 atgggtatggatggctccaaaaagacattttcccaacaaaagga 196  Q
    ||||| |||| |||| |  |||||| || |||||||||| ||||    
T  3374110 atgggcatggctggccctgaaaagatatcttcccaacaatagga 3374067  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 3353475 - 3353406
Alignment:
Q  59 ttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgcct 128  Q
    ||||||||| || ||||  ||||| |||||||| |||||||||||||||| ||| |||||||| ||||||    
T  3353475 ttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 3353406  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 3342776 - 3342702
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgcc 127  Q
    ||||||||||||   ||| ||||| ||||||||||||   |||||||||||||||| |||  |||||||||||||    
T  3342776 catcttttctagatcaggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgcc 3342702  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 1794187 - 1794138
Alignment:
Q  59 ttctagcataggcgaatagagaagtagaaatctcataaaatctaattcag 108  Q
    |||||| | ||| ||||| |||||||||||||| ||||||||||||||||    
T  1794187 ttctaggacaggagaatatagaagtagaaatctgataaaatctaattcag 1794138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 4333563 - 4333672
Alignment:
Q  40 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacac 139  Q
    ||||||||||   ||||||||||||||   | ||||| |||||||||||||| || |||| ||||||||  |   ||||||||||||| || |||  |||    
T  4333563 caggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgccatctatcgtcac 4333662  T
Q  140 atgtcgcact 149  Q
    ||||||||||    
T  4333663 atgtcgcact 4333672  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 2007720 - 2007658
Alignment:
Q  260 taaatcatattgtattgatcgatacaacatgaataggaagatacatgag--tctgatttatagg 321  Q
    ||||||||||||||||||| |||| || ||||| | |||||||||||||  |||||||||||||    
T  2007720 taaatcatattgtattgattgata-aagatgaaaaagaagatacatgagtctctgatttatagg 2007658  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 6599659 - 6599755
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcact 149  Q
    |||| ||||||||| ||| ||||| ||||||| ||| || || || ||||| |||| ||| |||||||||||||| || ||   |||||||||||||    
T  6599659 catcctttctagcacaggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcact 6599755  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 20936246 - 20936082
Alignment:
Q  40 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacac 139  Q
    ||||||||||   |||||||||||||| ||| ||||| |||||||||||| | ||||||||||||||   |||  ||||| ||||||| || |||  |||    
T  20936246 caggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttaccaaagatgccatctatcgtcac 20936147  T
Q  140 atgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtg 204  Q
    |||||||||| | ||||| |||| |||| || ||||||  |||||||||||| |||  |||||||    
T  20936146 atgtcgcactcgaatgggcatggctggcgccgaaaagattttttcccaacaataggcagcaggtg 20936082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 20954474 - 20954323
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 152  Q
    ||||||||||||||| || ||||| |||||||||||| | ||||||||||||||    ||  ||||| ||||||| ||||||  |||||||||||||||     
T  20954474 catcttttctagcatgggagaatatagaagtagaaatttgataaaatctaattccaaattggtaccaaagatgccatcaatcgccacatgtcgcacttga 20954375  T
Q  153 atgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtg 204  Q
    ||||| |||| |||  || |||| | || |||||||||| ||| ||||||||    
T  20954374 atgggcatggctggtgccgaaaatatatcttcccaacaataggcggcaggtg 20954323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 20924623 - 20924478
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 152  Q
    ||||||||  |||| ||| |||||||||||||||||||| |||||||||||||||| |||  ||||||||||| |||  |||  ||||||| ||| || |    
T  20924623 catctttttgagcacaggtgaatagagaagtagaaatctgataaaatctaattcagatttggtaccagagatgtcttgtatctccacatgttgcaatttg 20924524  T
Q  153 atgggtatggatggctccaaaaagacattttcccaacaaaaggagg 198  Q
    | | | ||   ||||||| |||||| || |||||||||| ||||||    
T  20924523 aggagcatatctggctccgaaaagatatcttcccaacaataggagg 20924478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 39275388 - 39275231
Alignment:
Q  40 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacac 139  Q
    ||||||||||   ||| |||||||||||||| ||||| |  || |||||| | |||||||||||||||| ||| || |||| ||||||  | ||   |||    
T  39275388 caggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccac 39275289  T
Q  140 atgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggag 197  Q
    |||||| ||||||||||| |||| |||| |  |||||  || |||||||||| |||||    
T  39275288 atgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaataggag 39275231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 21239013 - 21238958
Alignment:
Q  53 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcag 108  Q
    ||||||||||| |||||| |||| ||||||||||||||| ||||||||||| ||||    
T  21239013 catcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcag 21238958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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