View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_27 (Length: 316)
Name: NF6855_low_27
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 12907881 - 12908179
Alignment:
| Q |
9 |
acatcacaataaagaaagaaaactgaacaatgattcatggtagtatttctcaaatatccacctcattaatcattggcaggaattcagcagcaggttggaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12907881 |
acatcacaataaagaaagaaaactgaacaatgattcatggtagtatttctcaaatatccacctcattaatcattggcaggaattcagcagcaggttggaa |
12907980 |
T |
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| Q |
109 |
taaattaaccttcttgccctgtaattttaaggatcataagagagacagcaatttattaagatactcgaagggatattcataataggatgagaggtagaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12907981 |
taaattaaccttcttgccctgtaattttaaggatcataagagagacagcaatttattaagatactcgaagggatattcataataggatgagaggtagaaa |
12908080 |
T |
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| Q |
209 |
ctttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggttaagtgacacagattgagattgtctaacagggccaatgatgtccat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12908081 |
ctttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggttatgtgacacagattgagattgtctaacagggccaatgatgtccat |
12908179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 13312246 - 13311964
Alignment:
| Q |
9 |
acatcacaataaagaaagaaaactgaacaatgattcatggtagtatttctcaaatatccacctcattaatcattggcaggaattcagcagcaggttggaa |
108 |
Q |
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|||||||||||||||||||||| |||| ||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13312246 |
acatcacaataaagaaagaaaattgaaaaatgattaataatagtagt--------atccacctcattaatcattggcaggaattcagcagcaggttggaa |
13312155 |
T |
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| Q |
109 |
taaattaaccttcttgccctgtaattttaaggatcataagagagacagcaatttattaagatactcgaagggatattcataataggatgagaggtagaaa |
208 |
Q |
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| T |
13312154 |
taaattaaccttc---ccttgtaatt----ggatcataagagagatatcaatttattaagattctcgaagagatattcataattggaaga-atgtagaca |
13312063 |
T |
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| Q |
209 |
ctttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggttaagtgacacagattgagattgtctaacagggccaatgatgtccat |
307 |
Q |
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| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||| |
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| T |
13312062 |
cattgaccacagtacctgcttgtctgcggacttaatgatgcaattagggtggttatgtgatatagataaagattgtctaacagggccaatgatgtccat |
13311964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 1566278 - 1566209
Alignment:
| Q |
68 |
acctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaatttta |
137 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
1566278 |
acctcatcgatcataggcaggaattcagcagcaggttggaataaattaacttccttaccctgtaatttta |
1566209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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