View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_low_28 (Length: 294)

Name: NF6855_low_28
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_low_28
NF6855_low_28
[»] chr1 (17 HSPs)
chr1 (3-292)||(2020472-2020782)
chr1 (3-191)||(2011219-2011407)
chr1 (3-180)||(2012716-2012893)
chr1 (1-161)||(2007231-2007391)
chr1 (4-182)||(1793464-1793642)
chr1 (1-172)||(4334124-4334295)
chr1 (1-167)||(3379489-3379655)
chr1 (1-159)||(3373466-3373624)
chr1 (197-272)||(2011471-2011548)
chr1 (1-182)||(3362478-3362659)
chr1 (1-96)||(3342012-3342107)
chr1 (1-164)||(4322244-4322407)
chr1 (210-292)||(2007499-2007581)
chr1 (18-167)||(6600951-6601100)
chr1 (222-292)||(2012995-2013066)
chr1 (222-292)||(1793701-1793771)
chr1 (115-167)||(4332673-4332725)
[»] chr4 (1 HSPs)
chr4 (1-167)||(21238241-21238407)
[»] chr2 (3 HSPs)
chr2 (1-177)||(20953730-20953906)
chr2 (4-177)||(20935195-20935368)
chr2 (1-97)||(20924191-20924287)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 292
Target Start/End: Original strand, 2020472 - 2020782
Alignment:
Q  3 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| || ||||||||||||||||    
T  2020472 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaactg 2020571  T
Q  103 ctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactca---------------------tttactttaacttgactt 181  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||                     ||||||||||||||||||    
T  2020572 ctctatgtgtgttcagaagctcgcctaatcttaaaaaactagaaataattgtgagtactcatttactttgacttgacttttctttactttaacttgactt 2020671  T
Q  182 ttatttgctgggaaggaaatcgcaaacctttttctgcgttaagtatttgtttagtgcatttaaagttcccagtctagtattggaagttagtttctaaaat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||     
T  2020672 ttatttgctgggaaggaaatcgcaaacctttttctgcgttaagtatttgtttagtacatttaaagttcccagtttagtattggaagttagtttctaaaac 2020771  T
Q  282 ttgtacacttg 292  Q
    |||||||||||    
T  2020772 ttgtacacttg 2020782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 2011219 - 2011407
Alignment:
Q  3 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactg 102  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||  | ||| | |||||||||||||||||||||||||||||||||||||||||    
T  2011219 gctgcaggtgttgtgccactaaagcttcctacaccttgtattaatctaatgtctctatggttaagtataaacttcaatgagttgaaggaaatttcaactg 2011318  T
Q  103 ctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttactttaacttgacttttatttgctg 191  Q
    ||||| |||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||||||    
T  2011319 ctctaagtgtgttcagaagctcgcctaatcttaaagaactaaaaatatttgtgagtactcatttactttgaattgacttttctttgctg 2011407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 2012716 - 2012893
Alignment:
Q  3 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactg 102  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | || ||||| |||||||||||||    
T  2012716 gctgcaggtgttgtgccagtaaagcttcctacaccttgtattaatctaacgtatctttggttaagtataaacttctacgacttgaaagaaatttcaactg 2012815  T
Q  103 ctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttactttaacttgact 180  Q
    |||||||||||||||||||| | |||||||||||| || || | ||||||||||||||||||||| |||  |||||||    
T  2012816 ctctatgtgtgttcagaagctcgcctaatcttaaagaattaaatatatttgtgagtactcatttagtttggcttgact 2012893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 2007231 - 2007391
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| || ||||||||||||||    
T  2007231 tggctgcaggtgctgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaac 2007330  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtact 161  Q
    |||||||||||||||||| ||| | |||||||||||| || || | |||||||||||||||    
T  2007331 tgctctatgtgtgttcaggagctcgcctaatcttaaagaattaaatatatttgtgagtact 2007391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 1793464 - 1793642
Alignment:
Q  4 ctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgc 103  Q
    ||||||||||||| |||  || |||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||| ||||||||||||||| ||||    
T  1793464 ctgcaggtgttgtgccaacaatgcttcctacaccttgtatcaatataacatatctttggttaagcataaacttcaatgacttgaaggaaatttcagctgc 1793563  T
Q  104 tctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttactttaacttgacttt 182  Q
    |||||| ||||| |||||| | |||||||||||| ||||| | ||||| |||||| |||||||| |||  |||||||||    
T  1793564 tctatgcgtgtttagaagctcgcctaatcttaaagaactacatatattagtgagtgctcatttagtttggcttgacttt 1793642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 4334295 - 4334124
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||||  ||||  ||||||||| || |  || ||||||||||  |    
T  4334295 tggctgcaggtgttttgccagtaaagcttcctacaccttgtattaatctaagttttctttccttaaccataaacttcgataacatggaggaaatttcggc 4334196  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttacttta 172  Q
     ||||| ||||||||||||||| ||||||| ||| ||||| || |||||| ||||||||||| |||| ||||    
T  4334195 cgctctttgtgtgttcagaagctcacctaaccttcaaaaattaaaaatatctgtgagtactcgtttagttta 4334124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3379489 - 3379655
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    |||||||||||| |||  |||||||||||||||||||||||||  ||||||  |||||||  ||| |||||||||||||||  ||||||||||||||  |    
T  3379489 tggctgcaggtgatgtatcagtaaagcttcctacaccttgtatcgatctaagttatctttccttatgtataaacttcaatgtcttgaaggaaatttcggc 3379588  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcattta 167  Q
    ||| || ||  || |||||||| | ||||| ||||||||| | |||||||||||||||||| |||||    
T  3379589 tgccctttgcttgctcagaagctcccctaaccttaaaaaattggaaatatttgtgagtacttattta 3379655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3373466 - 3373624
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    ||||||||| || ||| ||||||||||||||| |||||||||| |  |||    | ||||  ||| | |||||||||||||| ||||||||||||||| |    
T  3373466 tggctgcagatgatgtgccagtaaagcttcctgcaccttgtatcagcctatgtgagctttccttatgcataaacttcaatgacttgaaggaaatttcagc 3373565  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagta 159  Q
    |||||| ||  || |||||||| ||||||||||||||||| ||||||||||||||||||    
T  3373566 tgctctttgcttgctcagaagctcacctaatcttaaaaaattagaaatatttgtgagta 3373624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 2011471 - 2011548
Alignment:
Q  197 gaaatcgcaaacctttttctgcgttaagtatttgtttagtgcatttaaagttcccagtc--tagtattggaagttagt 272  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||  |||||||||||||||||    
T  2011471 gaaatcgcaaacttttttctgcgttaagtatttgtttagtgcctttaaagttcacaatctatagtattggaagttagt 2011548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 3362478 - 3362659
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    |||||||||||||||| ||| |||||||||| ||||||||||| ||||| | | ||||||  ||| | ||| ||||| |||| |||||| ||||||   |    
T  3362478 tggctgcaggtgttgtgccaataaagcttcccacaccttgtatcaatctcagacatctttccttatgcatagacttcgatgacttgaagaaaattttggc 3362577  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttactttaacttgacttt 182  Q
    |||||| ||  || ||| |||| |||||||||||  |||| | |||||| |||||||||||| |||| |||  |||||||||    
T  3362578 tgctctttgcttgctcaaaagctcacctaatcttcgaaaattggaaataattgtgagtactcgtttagtttggcttgacttt 3362659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3342012 - 3342107
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgt-taagtataaacttcaatgagttgaaggaaattt 96  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||| | || ||| || |||| |||||||||||||| |||||| ||||||    
T  3342012 tggctgcaggtattgtgccagtaaagcttcctacaccttgtatcaatctaa-aaatttttcgtgtaagcataaacttcaatgacttgaagaaaattt 3342107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 4322407 - 4322244
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||  | |||||  |||||  |||||||| || |  ||  ||||||||  ||    
T  4322407 tggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttctttaagcgtaaacttcgataacatggcggaaattttgac 4322308  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcat 164  Q
    |||||| ||| || || |||||  ||| ||||||   ||| ||||||||| |||||||||||||    
T  4322307 tgctctttgtttgctccgaagctaacccaatcttctgaaattagaaatatatgtgagtactcat 4322244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 2007499 - 2007581
Alignment:
Q  210 tttttctgcgttaagtatttgtttagtgcatttaaagttcccagtctagtattggaagttagtttctaaaatttgtacacttg 292  Q
    ||||| ||| |||||||||| |||||||| ||| ||||||||| || |||||||||| ||| ||||||||| |||||||||||    
T  2007499 tttttttgctttaagtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttg 2007581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 6601100 - 6600951
Alignment:
Q  18 ccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttca 117  Q
    ||||||||||||||||| ||||| ||| ||||||  |||||||   || | ||||||||| |||| |  |||||||||||| ||||||| ||  | ||||    
T  6601100 ccagtaaagcttcctaccccttgcattgatctaagttatctttccatacgcataaacttctatgattcaaaggaaatttcagctgctctttgccttttca 6601001  T
Q  118 gaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcattta 167  Q
    ||||| ||||||||||   | |||| |||||||| ||||||||| |||||    
T  6601000 gaagctcacctaatctacgagaactcgaaatattggtgagtacttattta 6600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 2012995 - 2013066
Alignment:
Q  222 aagtatttgtttagtgcatttaa-agttcccagtctagtattggaagttagtttctaaaatttgtacacttg 292  Q
    ||||||||||||||||| |||   |||||| | |||||||||||||||||||||||||||||||| ||||||    
T  2012995 aagtatttgtttagtgccttttctagttcctaatctagtattggaagttagtttctaaaatttgtgcacttg 2013066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 1793701 - 1793771
Alignment:
Q  222 aagtatttgtttagtgcatttaaagttcccagtctagtattggaagttagtttctaaaatttgtacacttg 292  Q
    |||||||||| |||||| ||| |||||  || |||||||||||||||| | |||||||| |||||||||||    
T  1793701 aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttg 1793771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 4332725 - 4332673
Alignment:
Q  115 tcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcattta 167  Q
    |||||||| |||||||||||  |||| ||||||||| ||||||||||||||||    
T  4332725 tcagaagctcacctaatcttcgaaaagtagaaatatctgtgagtactcattta 4332673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 21238241 - 21238407
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||   ||||||||||||  |||||||||||||| ||||||||||| ||  |    
T  21238241 tggctgcaggtgtcgttccagtaaagcttcctacaccttgtattcatctaagccatcttttgttaaacataaacttcaatgacttgaaggaaatctcggc 21238340  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcattta 167  Q
    |||||| ||  || |||||||| ||||||||||   |||| || |||||| ||||||||||| ||||    
T  21238341 tgctctctgcttgctcagaagctcacctaatctgcgaaaattaaaaatatctgtgagtactcgttta 21238407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 20953730 - 20953906
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaac 100  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||  |||||||  ||| | ||||||||| |  |  | |||||||||||  |    
T  20953730 tggctgcaggtgttttgccagtaaagcttcctacaccttgtatttatctaagctatctttccttatgcataaacttcgacaacctaaaggaaatttcggc 20953829  T
Q  101 tgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttactttaacttg 177  Q
    |||||| ||  || |||||||| |||||||||||  |||| |||||||||||||||||||||||||| |||| ||||    
T  20953830 tgctctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgagtactcatttagtttagcttg 20953906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 20935195 - 20935368
Alignment:
Q  4 ctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgc 103  Q
    ||||||||||| | |||  |||||||||||||||||||||  ||||||   ||||||  || || ||||||||| |||| ||||||||||||||  ||||    
T  20935195 ctgcaggtgttttgccaaaaaagcttcctacaccttgtatggatctaagtcatctttccttgagcataaacttcgatgacttgaaggaaatttcggctgc 20935294  T
Q  104 tctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttactttaacttg 177  Q
    ||| ||  || |||||||| |||||||||||  |||| |||||||||||||||||||||||||| |||| ||||    
T  20935295 tctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgagtactcatttagtttagcttg 20935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 20924191 - 20924287
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttc 97  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||   || |  |||||||||| || |||| |||||||||    
T  20924191 tggctgcaggtgtggtgccagtaaagcttcctacactttgtattaatctaacatttctttccatatgcctaaacttcaacgacttgacggaaatttc 20924287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University