View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_29 (Length: 287)
Name: NF6855_low_29
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_29 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 48730101 - 48730369
Alignment:
| Q |
19 |
cctttgactcggacaagatctttattaatatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatact |
118 |
Q |
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| T |
48730101 |
cctttgactcggacaaggtctttattaatatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatact |
48730200 |
T |
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| Q |
119 |
cgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaa |
218 |
Q |
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| T |
48730201 |
cgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaa |
48730300 |
T |
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| Q |
219 |
tggtattaaattatagcgttctaagatgtaaggatccatttgaatcagtttgtatagcaagtctatatc |
287 |
Q |
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| T |
48730301 |
tggtattaaattatagcgttctaagatgtaaggatcgatttgaatcagtttgaatagcaagtctatatc |
48730369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 4819091 - 4818941
Alignment:
| Q |
79 |
ttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtat |
178 |
Q |
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| T |
4819091 |
ttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagat |
4818992 |
T |
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| Q |
179 |
gtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
229 |
Q |
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| T |
4818991 |
gacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 31040743 - 31040851
Alignment:
| Q |
121 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg |
220 |
Q |
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| T |
31040743 |
tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatg |
31040842 |
T |
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| Q |
221 |
gtattaaat |
229 |
Q |
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| T |
31040843 |
gaattaaat |
31040851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 31075952 - 31076001
Alignment:
| Q |
121 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
170 |
Q |
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| T |
31075952 |
tttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa |
31076001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 28865196 - 28865156
Alignment:
| Q |
189 |
tgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
229 |
Q |
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| T |
28865196 |
tgcagcgatatgtaaaggagtttcaacaaatggtattaaat |
28865156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 30648044 - 30648008
Alignment:
| Q |
189 |
tgcagcaatatgcaaaggagtatcaacaaatggtatt |
225 |
Q |
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| T |
30648044 |
tgcagcaatatgtaaaggagtttcaacaaatggtatt |
30648008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 26087519 - 26087599
Alignment:
| Q |
90 |
agcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
170 |
Q |
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| T |
26087519 |
agcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaa |
26087599 |
T |
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