View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_3 (Length: 775)
Name: NF6855_low_3
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 17 - 624
Target Start/End: Complemental strand, 51211134 - 51210527
Alignment:
| Q |
17 |
acatcatatagacagttggaatgtgatatgacataaatttagaataaaaattactctatacttgtatgcttcaacaaaaagaaaccattccatataacac |
116 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211134 |
acataatatagacagttggaatgtgatatgacataaatttagaataaaaattactctatacttgtatgcttcaacaaaaagaaaccattccatataacac |
51211035 |
T |
|
| Q |
117 |
tattttcacatcttccctatagaatatttcaccaatggattaaatagttgttaccttggaaacttgatgaactacttgtttagtgctaacatttcctcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211034 |
tattttcacatcttccctatagaatatttcaccaatggattaaatagttgttaccttggaaacttgatgaactacttgtttagtgctaacatttcctcca |
51210935 |
T |
|
| Q |
217 |
aaagcattaatagcatctccaataattatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatccc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210934 |
aaagcattaatagcatctccaataattatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatccc |
51210835 |
T |
|
| Q |
317 |
atgagtctgcaaatgtgaaaagcttgtaaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210834 |
atgagtctgcaaatgtgaaaagcttgtaaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttc |
51210735 |
T |
|
| Q |
417 |
ttgaacattttcagcacctgcaggaactggtggatgatgacttgttgaccctgtcatctcagttgaagcaatatctccatccaagctagccttggccaac |
516 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210734 |
ttgaacattttcagcacctgcaggaactggtggatgatgacttgttgaccctgtcatctcagttgaagcaatatctccatccaagctagccttggccaac |
51210635 |
T |
|
| Q |
517 |
atttctccaagaaaaacaacaatgaaacagctgctgaagaaaattcactagtctgagttagcaactctcattcagctattccattaagcctcgtttggat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210634 |
atttctccaagaaaaacaacaatgaaacagctgctgaagaaaattcactagtctgagttagcaactctcattcagctattccattaagcctcgtttggat |
51210535 |
T |
|
| Q |
617 |
aaatagct |
624 |
Q |
| |
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|||||||| |
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|
| T |
51210534 |
aaatagct |
51210527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 689 - 756
Target Start/End: Complemental strand, 51210530 - 51210463
Alignment:
| Q |
689 |
agctataagatgtttctatcagctatatcttggagagtttatgaaaataagctgaaaaatagtttatg |
756 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51210530 |
agctataagatgtttttatcagctatatcttggagagtttatgaaaataagctgaaaaatagtttatg |
51210463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 51197336 - 51197221
Alignment:
| Q |
241 |
attatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagct |
340 |
Q |
| |
|
|||| |||||| || ||||| |||||||||||||||| ||| | |||||||||||||||||| |||| |||| | || || ||||||| |||||||| |
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| T |
51197336 |
attaaagtcatcaagggcattgagattccattcccaatagcaccaacagtcccaacaaacatcaataaatgatccaaagaatcagcaaatgagaaaagct |
51197237 |
T |
|
| Q |
341 |
tgtaaaagggtactgt |
356 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
51197236 |
tgtataagggtactgt |
51197221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 714 - 746
Target Start/End: Original strand, 53792591 - 53792623
Alignment:
| Q |
714 |
tatcttggagagtttatgaaaataagctgaaaa |
746 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
53792591 |
tatcttggagagtttatgaaaataagctgaaaa |
53792623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 714 - 744
Target Start/End: Original strand, 44249305 - 44249335
Alignment:
| Q |
714 |
tatcttggagagtttatgaaaataagctgaa |
744 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44249305 |
tatcttggagagtttatgaaaataagctgaa |
44249335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 747
Target Start/End: Complemental strand, 30377465 - 30377432
Alignment:
| Q |
714 |
tatcttggagagtttatgaaaataagctgaaaaa |
747 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
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|
| T |
30377465 |
tatcttggagagcttatgaaaataagctgaaaaa |
30377432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 164 - 519
Target Start/End: Original strand, 49738998 - 49739353
Alignment:
| Q |
164 |
ttgttaccttggaaacttgatgaactacttgtttagtgctaacatttcctccaaaagcattaatagcatctccaataattatagtcattaaaggcataga |
263 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
49738998 |
ttgttaccttggaaactagatgaactacttggttggtgttaacatttcctccaaaagcatcaatagcatctccaataattatagtcagtaaaggcataga |
49739097 |
T |
|
| Q |
264 |
gattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttgtaaaagggtactgtcttattg |
363 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||| |
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| T |
49739098 |
gactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgttttcttg |
49739197 |
T |
|
| Q |
364 |
ctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaactggt---ggatgatgacttg |
460 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||| | ||||||| |||||||| ||| |
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|
| T |
49739198 |
ctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacct---gaaactggtagatgatgatgatttg |
49739294 |
T |
|
| Q |
461 |
ttgaccctgtcatctcagttgaagcaatatctccatccaagctagccttggccaacatt |
519 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
49739295 |
ttgaccctgtcatctcagttgcagtaatatctccgtccaagctagccttggccaacatt |
49739353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 745
Target Start/End: Complemental strand, 29503166 - 29503100
Alignment:
| Q |
679 |
ttttcataaaagctataagatgtttctatcagctatatcttggagagtttatgaaaataagctgaaa |
745 |
Q |
| |
|
|||||| | ||| ||||||||||||| || | ||||||||||||||| ||||| ||||||||||||| |
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|
| T |
29503166 |
ttttcaaagaagttataagatgtttccataaactatatcttggagagcttatggaaataagctgaaa |
29503100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 747
Target Start/End: Original strand, 1810684 - 1810717
Alignment:
| Q |
714 |
tatcttggagagtttatgaaaataagctgaaaaa |
747 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
1810684 |
tatcttgaagagtttatgaaaataagctgaaaaa |
1810717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 742
Target Start/End: Original strand, 8062508 - 8062572
Alignment:
| Q |
676 |
ttgttttcataaaagctataagatgtttctatcagctatatcttggagagtttatgaaaataagctg |
742 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||| |||||| |||||||||||||||||||||| |
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|
| T |
8062508 |
ttgttttcatataagctataagatgttctcataagc--tatcttagagagtttatgaaaataagctg |
8062572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 746
Target Start/End: Complemental strand, 10272480 - 10272449
Alignment:
| Q |
715 |
atcttggagagtttatgaaaataagctgaaaa |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10272480 |
atcttggagagtttatgaaaataagctgaaaa |
10272449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 756
Target Start/End: Complemental strand, 28482321 - 28482242
Alignment:
| Q |
674 |
agttgttttcataaaagctataagatgtttctatcagctatatcttggagagtttatgaaaataagctgaaaaatagtttatg |
756 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| ||| || ||| ||||||||| ||| ||||||||||| |||||||||||||| |
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|
| T |
28482321 |
agttgctttcatataagctataagctgtttttataagttat--cttggagagcttacgaaaataagct-aaaaatagtttatg |
28482242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 745
Target Start/End: Complemental strand, 7575746 - 7575717
Alignment:
| Q |
716 |
tcttggagagtttatgaaaataagctgaaa |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7575746 |
tcttggagagtttatgaaaataagctgaaa |
7575717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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