View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_31 (Length: 281)
Name: NF6855_low_31
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 46402074 - 46402328
Alignment:
| Q |
20 |
tcatgtatgtatcataattggttcctgattgtgaatattttagtgctgattgcttaccaatttctgtttgtgactgcacaagattatctatgcccgtgcc |
119 |
Q |
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| T |
46402074 |
tcatgtatgtatcataattggttcctgattgtgaatattttagtgctgattgcttaccaatttctgtttgtgactgcacaagattatctatgcccgtgcc |
46402173 |
T |
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| Q |
120 |
tacacttatgagcatcagtataaccttctccttggtttggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtggta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46402174 |
tacacttatgagcatcagtataaccttctccttggtttggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtggta |
46402273 |
T |
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| Q |
220 |
tagagtttccttccgttgcaatatcatttgatgtggaaagttgactgaatatatt |
274 |
Q |
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| T |
46402274 |
tagagtttccttccgttgcaatatcatttgatgtggaaagttgactgaatatatt |
46402328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 17113787 - 17113687
Alignment:
| Q |
109 |
atgcccgtgcctacacttatgagcatcagtataaccttctccttggtttggctgctaaa--atggctgaagaaccattcagacttctggtgagatgttac |
206 |
Q |
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| T |
17113787 |
atgctcgtgcctaaacttatgagcatcaatataaccttctccttggtttgggtgctatataatgtttaaagaaccattcagatttctggtgagatattac |
17113688 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
17113687 |
t |
17113687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 43 - 274
Target Start/End: Original strand, 39950733 - 39950965
Alignment:
| Q |
43 |
cctgattgtgaatattttagtgctgattgcttaccaatttctgtttgtgactgcacaagatt-atctatgcccgtgcctacacttatgagcatcagtata |
141 |
Q |
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|||||||||||||||||| ||||||| ||||||||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||| ||| |
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| T |
39950733 |
cctgattgtgaatattttggtgctgactgcttaccagtttctgtatgtgaatgcacaagatttatctatgctcgtgcctacacttatgaacatcagcata |
39950832 |
T |
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| Q |
142 |
accttctccttggtttggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtggtatagagtttccttccgttgcaat |
241 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
39950833 |
accttcttcttggtttggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtagtatagagttgccttccgttgcaat |
39950932 |
T |
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| Q |
242 |
atcatttgatgtggaaagttgactgaatatatt |
274 |
Q |
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| T |
39950933 |
atcgtgtgatgtggggagttgattgaatatatt |
39950965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 27743743 - 27743510
Alignment:
| Q |
25 |
tatgtatcataattggttcctgattgtgaatattttagtgctgattgcttaccaatttctgtttgtgactgcacaagattatctatgcccg-tgcctaca |
123 |
Q |
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||||||||||| |||| ||| || |||||||||| |||||||||||||||| | ||||||||| ||||||||||||| |||||||| || |||||||| |
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| T |
27743743 |
tatgtatcatagttggatccgaatagtgaatattt-agtgctgattgcttacta-tttctgtttttgactgcacaagagcatctatgctcggtgcctaca |
27743646 |
T |
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| Q |
124 |
cttatgagcatcagtata----accttctccttggtttggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtggta |
219 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||| | | |
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| T |
27743645 |
cttatgagcagcagtatatataaccttctccttggtttggctgctaaaatgtctgaagaaccattcatacttctggtgagatgttactgatcgagtagaa |
27743546 |
T |
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| Q |
220 |
tagagtttccttccgttgcaatatcatttgatgtgg |
255 |
Q |
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||||||| |||| |||||||||||| |||||||| |
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| T |
27743545 |
tagagttatcttctgttgcaatatcaagtgatgtgg |
27743510 |
T |
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