View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_32 (Length: 269)
Name: NF6855_low_32
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_32 |
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| [»] scaffold0810 (1 HSPs) |
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Alignment Details
Target: scaffold0810 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 3818 - 4051
Alignment:
| Q |
29 |
aggtagtgtttggcctagcttattttagacttttcttctccttaagagaagaagccgggccaaacagttttcactagagaagcccttaatagaaaaagta |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3818 |
aggtagtgtttggcctagcttattttagacttttcttctccttaagagaagaagtcaggccaaacagttttcactaga--agcccttaatagaaaaagta |
3915 |
T |
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| Q |
129 |
gcttaaagaatgcaaagaaaaacatgcagaaaagcgcttcctaacaagctgttgataggaacttttggcaagcatatgcatgctttttgtagcagaccac |
228 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
3916 |
gcttaaagaatgcaaagaaaaacatgcagaaaagcgccttctaacaagctgttgataggaacttttggcaagcatatgcgagctttttgtagcagatcac |
4015 |
T |
|
| Q |
229 |
tattcgattcccgaaggctggtgatcttacatttca |
264 |
Q |
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||||||||||||| |||||| ||||||||||||||| |
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| T |
4016 |
tattcgattcccgcaggctgatgatcttacatttca |
4051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 54557588 - 54557821
Alignment:
| Q |
29 |
aggtagtgtttggcctagcttattttagacttttcttctccttaagagaagaagccgggccaaacagttttcactagagaagcccttaatagaaaaagta |
128 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
54557588 |
aggtagtgtttgacctagcttattttagacttttcttctccttaagagaagaagtcaggccaaacaattttcactaga--agcccttaatagaaaaagta |
54557685 |
T |
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| Q |
129 |
gcttaaagaatgcaaagaaaaacatgcagaaaagcgcttcctaacaagctgttgataggaacttttggcaagcatatgcatgctttttgtagcagaccac |
228 |
Q |
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| T |
54557686 |
gcttaaagaatgcaaagaaaaacatgcagaaaagcgcttcctaacaagctgttgataggaacttttggcaagcatatgcgagctttttgtagcagaccac |
54557785 |
T |
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| Q |
229 |
tattcgattcccgaaggctggtgatcttacatttca |
264 |
Q |
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| T |
54557786 |
tattcgattcccgcaggctaatgatcttacatttca |
54557821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 25426419 - 25426186
Alignment:
| Q |
29 |
aggtagtgtttggcctagcttattttagacttttcttctccttaagagaagaagccgggccaaacagttttcactagagaagcccttaatagaaaaagta |
128 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25426419 |
aggtagtgtttggtctagcttattttagacttttcttctccttaagagaagaagtcaggccaaacagttttcactaga--agcccttaatagaaaaagta |
25426322 |
T |
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| Q |
129 |
gcttaaagaatgcaaagaaaaacatgcagaaaagcgcttcctaacaagctgttgataggaacttttggcaagcatatgcatgctttttgtagcagaccac |
228 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
25426321 |
gcttaaagaatgcaaagaaaaacatgcagaaaagggcttcctaacaagctgttgataggaacttttggcaagcatatgcgagctttttgtagcagatcac |
25426222 |
T |
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| Q |
229 |
tattcgattcccgaaggctggtgatcttacatttca |
264 |
Q |
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||||||||||||| |||||| ||||||||||||||| |
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| T |
25426221 |
tattcgattcccgcaggctgatgatcttacatttca |
25426186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 24724412 - 24724643
Alignment:
| Q |
29 |
aggtagtgtttggcctagcttattttagacttttcttctccttaagagaagaagccgggccaaacagttttcactagagaagcccttaatagaaaaagta |
128 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
24724412 |
aggtagtgtttggcctagcttattttagactttgcttctccttaagagaagaagccgggccaaacaattttcactaga--agcccttaatagaaaaagta |
24724509 |
T |
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| Q |
129 |
gcttaaagaatgcaaagaaaaacatgcagaaaagcgcttcctaacaagctgttgataggaacttttggcaagcatatgcatgctttttgtagcagaccac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
24724510 |
gcttaaagaatgcaaagaaaaacatgcagaaaagcgcttcctaaaaagctgttgaaaggaacttttggcaagcatatgcgagctttttgtagaagaccac |
24724609 |
T |
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| Q |
229 |
tattcgattcccgaaggctggtgatcttacattt |
262 |
Q |
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||||||||||||| ||||| ||| ||||||||| |
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| T |
24724610 |
tattcgattcccgctggctgatgaccttacattt |
24724643 |
T |
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