View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_34 (Length: 249)
Name: NF6855_low_34
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 32818484 - 32818246
Alignment:
| Q |
11 |
acatcaaaaaattcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattatgaacacatggcactaatgtggcaa |
110 |
Q |
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| T |
32818484 |
acatcaaaaaattcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattacgaacacatggcactaatgtggcaa |
32818385 |
T |
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| Q |
111 |
taaaaacaacgacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818384 |
taaaaacaacgacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgt |
32818285 |
T |
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| Q |
211 |
aaggcacccaaatctcgcctcccaagtcccaatgtcttt |
249 |
Q |
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| T |
32818284 |
aaggcacccaaatctcgcctcccaagtcccaatgtcttt |
32818246 |
T |
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