View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_37 (Length: 244)
Name: NF6855_low_37
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7223803 - 7223576
Alignment:
| Q |
1 |
ctattttttcatcattctgctgctgctaccatctacatccttgtatatgtagacgatctgatcattaccggcacggattcaagtttgattaataacttca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7223803 |
ctatttgttcatcattctgctgctgctaccatctacatccttgtatatgtagacgatctgatcattaccggcacggattcaagtttgattgataacttca |
7223704 |
T |
|
| Q |
101 |
tcattaaccttaacaaggtgtttgctttaaaggatcagggagaattacattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7223703 |
tcattaaccttaacaaggtgtttgctttaaaggatcagggagaattgcattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcac |
7223604 |
T |
|
| Q |
201 |
tcaagaaggttatgttagagatattctg |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
7223603 |
tcaagaaggttatgttagagatattctg |
7223576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 42606859 - 42606639
Alignment:
| Q |
8 |
ttcatcattctgctgctgctaccatctacatccttgtatatgtagacgatctgatcattaccggcacggattcaagtttgattaataacttcatcattaa |
107 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42606859 |
ttcatcattctgctgctgcaaccatctacatccttgtatatgtagacgatctgctcattaccggcacagattcaagtttgattaataacttcatcattaa |
42606760 |
T |
|
| Q |
108 |
ccttaacaaggtgtttgctttaaaggatcagggagaattacattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcactcaagaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42606759 |
ccttaacaaggtgtttgctttaaaggatcagggagaattgcattatttcctcggtcttcaaatcacacgcaccagttctggggtgcaactcactcaagaa |
42606660 |
T |
|
| Q |
208 |
ggttatgttagagatattctg |
228 |
Q |
| |
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||||||||||||||||||||| |
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| T |
42606659 |
ggttatgttagagatattctg |
42606639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 27722732 - 27722512
Alignment:
| Q |
8 |
ttcatcattctgctgctgctaccatctacatccttgtatatgtagacgatctgatcattaccggcacggattcaagtttgattaataacttcatcattaa |
107 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27722732 |
ttcatcattctgctgctgcaaccatctacatccttgtatatgtagacgatctgctcattaccggcacagattcaagtttgattaataacttcatcattaa |
27722633 |
T |
|
| Q |
108 |
ccttaacaaggtgtttgctttaaaggatcagggagaattacattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcactcaagaa |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27722632 |
ccttaacaaggtgtttgctttaaaggatcagggagaattgcattatttcctcggtcttcaaatcacacgcaccagttctggggtgcaactcactcaagaa |
27722533 |
T |
|
| Q |
208 |
ggttatgttagagatattctg |
228 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
27722532 |
ggttatgttagagatattctg |
27722512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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