View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_low_41 (Length: 237)

Name: NF6855_low_41
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_low_41
NF6855_low_41
[»] chr8 (2 HSPs)
chr8 (1-235)||(9442399-9442633)
chr8 (1-235)||(24596795-24597029)
[»] chr6 (1 HSPs)
chr6 (1-235)||(27877016-27877250)
[»] chr4 (4 HSPs)
chr4 (1-235)||(30948490-30948724)
chr4 (1-235)||(42267679-42267913)
chr4 (1-235)||(48700128-48700362)
chr4 (1-235)||(2000661-2000895)
[»] chr3 (3 HSPs)
chr3 (1-235)||(5821582-5821816)
chr3 (1-235)||(2815570-2815804)
chr3 (1-235)||(42586727-42586961)
[»] chr2 (1 HSPs)
chr2 (1-235)||(827255-827489)
[»] chr5 (2 HSPs)
chr5 (1-235)||(34353786-34354020)
chr5 (1-235)||(41720186-41720420)
[»] chr7 (2 HSPs)
chr7 (1-187)||(8136818-8137006)
chr7 (182-235)||(8134854-8134907)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9442633 - 9442399
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9442633 ctaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 9442534  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
9442533 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaattatc 9442434  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
9442433 tctgggaggagcaagatacttcgtgtcattcattg 9442399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24597029 - 24596795
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    ||||||||||| || |||||||| |||||||  |||| |||||  ||||| || |  |||||||||||||| |||||  | |||||||||||||||||||    
24597029 ctaggccatatatcggaacgtggtttgaaagctcttgaggaacaaaatcttctacctgggctcaagacagtgaatttgtctttctgtgagcactgtgtga 24596930  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
      |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||    
24596929 caagcaagcaacatagattgaagttttccagagtaactactagaagcaaatacatacttgacttgatacattctgatgtgtgggagtcaccacaaatatc 24596830  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
      | |||||||||| | | || |||||||| ||||    
24596829 catgggaggagcaaaacattttgtgtcatttattg 24596795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 27877250 - 27877016
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27877250 ctaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 27877151  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
27877150 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaattatc 27877051  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
27877050 tctgggaggagcaagatacttcgtgtcattcattg 27877016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30948724 - 30948490
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30948724 ctaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 30948625  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
30948624 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccaaaattatc 30948525  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
30948524 tctgggaggagcaagatacttcgtgtcattcattg 30948490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42267679 - 42267913
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42267679 ctaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 42267778  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
42267779 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaattatc 42267878  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
42267879 tctgggaggagcaagatacttcgtgtcattcattg 42267913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 48700362 - 48700128
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48700362 ctaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 48700263  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
48700262 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaattatc 48700163  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
48700162 tctgggaggagcaagatacttcgtgtcattcattg 48700128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2000661 - 2000895
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||| ||| |||||||  ||||||||||  ||||| || |  |||||||||||| | |||||  | |||||||||||||||||||    
2000661 ctaggccatatgtcggaacatggtttgaaagctcttgcggaacaaaatcttctacctgggctcaagacaatgaatttgtctttctgtgagcactgtgtga 2000760  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
      |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| |||||||    
2000761 caagcaagcaacatagattgaagttttctatagtaactactagaagcaaatacatacttgacttaatacattctgatgtgtgggagtcgccacaaatatc 2000860  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
      | |||||||||| ||| || |||||||| ||||    
2000861 catgggaggagcaaaatattttgtgtcatttattg 2000895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5821816 - 5821582
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5821816 ctaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 5821717  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
5821716 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaattatc 5821617  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
5821616 tctgggaggagcaagatacttcgtgtcattcattg 5821582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2815804 - 2815570
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
2815804 ctaggccatatgtcataacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaattcagtaaatttaccattttgtgagcactgtgtga 2815705  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
2815704 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaattatc 2815605  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
2815604 tctgggaggagcaagatacttcgtgtcattcattg 2815570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42586727 - 42586961
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||||||| |||||||  ||||||||||  ||||| || |  |||||||||||| | |||||  | |||||||||||||||||||    
42586727 ctaggccatatgtcggaacgtggtttgaaagctcttgcggaacaaaatcttctacctgggctcaagacaatgaatttgtctttctgtgagcactgtgtga 42586826  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
      |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||    
42586827 caagcaagcaacatagattgaagttttccagagtaactactagaagcaaatacatacttgacttgatacattctgatgtgtgggagtcaccacaaatatc 42586926  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
      | |||||||||| ||| || |||||||| ||||    
42586927 catgggaggagcaaaatattttgtgtcatttattg 42586961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 827255 - 827489
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
827255 ctaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 827354  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
827355 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaattatc 827454  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
827455 tctgggaggagcaagatacttcgtgtcattcattg 827489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34353786 - 34354020
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
34353786 ctaggccatatgtcagaacgtggcttgaaagtccttgctgaacgcaatctccttcacgggctcaaggcagtaaatttaccattttgtgagcactgtgtga 34353885  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34353886 taagcaagcaacatagattgaagtttgctagagtaactactaaaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 34353985  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||||||||||||||||||||    
34353986 tctgggaggagcaagatacttcgtgtcattcattg 34354020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41720186 - 41720420
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
41720186 ctaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaaggcagtaaatttaccattttgtgagcactgtgtga 41720285  T
101 tgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41720286 taagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatatc 41720385  T
201 tcttggaggagcaagatacttcgtgtcattcattg 235  Q
    ||| |||||||||||||| || |||||||||||||    
41720386 tctaggaggagcaagatattttgtgtcattcattg 41720420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 8137006 - 8136818
Alignment:
1 ctaggccatatgtcagaacgtggcttgaaagtcctt-gcggaacgcaatctcctt-cacgggctcaagacagtaaatttaccattctgtgagcactgtgt 98  Q
    ||||||||||| | |||| |||||| |||| | ||| |||||||||||||||||| ||| |||| ||||| ||||| |||||||||||||||||||||||    
8137006 ctaggccatatattagaatgtggctggaaatttctttgcggaacgcaatctcctttcacaggctgaagacggtaaacttaccattctgtgagcactgtgt 8136907  T
99 gatgagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagt 187  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
8136906 gataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacatatactagacttgatccattatgatgtgtgggagt 8136818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 8134907 - 8134854
Alignment:
182 gggagtcaccagaaatatctcttggaggagcaagatacttcgtgtcattcattg 235  Q
    |||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||    
8134907 gggagtcaccagaaatatctctgggaggggcaagatatttcgtctcattcattg 8134854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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