View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_43 (Length: 236)
Name: NF6855_low_43
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 21317011 - 21317242
Alignment:
| Q |
10 |
tggacatcaatgttcctataggaaaaatgaactgtacctcttgagcaacaaggtgttgctccttcacctgtgaattgaattacaataactagtcatatgc |
109 |
Q |
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| T |
21317011 |
tggacatcaatgttcctatacgaaaaatgaactgtacctcttgagaaaga-ggtgttcctccttcacctgtgagttgaattacgataactagtcatatgc |
21317109 |
T |
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| Q |
110 |
tccttctgaaagagagggggtgtattttcaaaagacactccaacacccaaataagaatggatgctagaaggtatcaaaagtggtaagtcattaaagtga- |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21317110 |
tccttctgaaagagagggggtgtattttcaaaagacactccaacacttaaataagaatgggtgctagaaggtatcaaaagtggtaagtcattaaagtgat |
21317209 |
T |
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| Q |
209 |
-----ttgtacatgtgtgatgaggcccctattt |
236 |
Q |
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| T |
21317210 |
cgtactcgtacatgtgtggtgaggcccctattt |
21317242 |
T |
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