View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_low_44 (Length: 229)
Name: NF6855_low_44
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_low_44 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 29047140 - 29047362
Alignment:
| Q |
7 |
ccaagcaagttatcaaaccttaatcttgaagcctgcataaaccactataacaaaaccaatggctccaaagttccccttggtaaggttaggctcactggaa |
106 |
Q |
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| T |
29047140 |
ccaagcaagttatcaaaccttaatcttgaagcctgcataaaccactataacaaaaccaatggctccaaaattccccttggcaaggttaagctcactggaa |
29047239 |
T |
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| Q |
107 |
cctcatttgttccacattctgatgctgttgtattacactatcctcttgaaaagaaaggcattttttcgcgcacgaaaggtgaacttggtttgaaggtatt |
206 |
Q |
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| T |
29047240 |
cctcatttgttccacattctgatgctgttgtattacactatcctcttgaaaagaaaggcattttttcgcgcacgaaaggtgaacttggtttgaaggtatt |
29047339 |
T |
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| Q |
207 |
cattacaaataatccttctttaa |
229 |
Q |
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| T |
29047340 |
cattacaaataatccttctttaa |
29047362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 11705242 - 11705118
Alignment:
| Q |
82 |
cttggtaaggttaggctcactggaacctcatttgttccacattctgatgctgttgtattacactatcctcttgaaaagaaaggcattttttcgcgcacga |
181 |
Q |
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| T |
11705242 |
cttggtaaggtccgtctcacggaaacctcatttgtgccactttctgatgctgttgtattgcactaccctctggaaaagaaaatcaccttttctcgcgtaa |
11705143 |
T |
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| Q |
182 |
aaggtgaacttggtttgaaggtatt |
206 |
Q |
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| T |
11705142 |
aaggagagcttggtttgaaggtatt |
11705118 |
T |
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