View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_low_48 (Length: 225)

Name: NF6855_low_48
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_low_48
NF6855_low_48
[»] chr4 (8 HSPs)
chr4 (4-214)||(9581957-9582167)
chr4 (4-214)||(9587652-9587862)
chr4 (1-200)||(9569099-9569298)
chr4 (1-214)||(9593747-9593960)
chr4 (1-214)||(9602556-9602763)
chr4 (1-214)||(54295052-54295265)
chr4 (38-204)||(37897848-37898014)
chr4 (154-214)||(9574216-9574276)
[»] chr6 (18 HSPs)
chr6 (1-166)||(29012773-29012938)
chr6 (4-161)||(29131254-29131411)
chr6 (30-204)||(29145199-29145373)
chr6 (3-162)||(29300023-29300182)
chr6 (1-162)||(29152101-29152262)
chr6 (30-138)||(32740715-32740823)
chr6 (4-161)||(32744835-32744992)
chr6 (4-161)||(32960708-32960865)
chr6 (1-162)||(34278419-34278580)
chr6 (38-161)||(29124094-29124217)
chr6 (1-204)||(34281821-34282024)
chr6 (78-203)||(34258303-34258428)
chr6 (58-162)||(29137227-29137331)
chr6 (74-161)||(25520027-25520113)
chr6 (82-126)||(19697525-19697569)
chr6 (81-157)||(25319361-25319437)
chr6 (38-162)||(25528826-25528950)
chr6 (81-157)||(26149054-26149130)
[»] chr7 (1 HSPs)
chr7 (2-203)||(42446242-42446442)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-204)||(16197-16400)
[»] scaffold0613 (1 HSPs)
scaffold0613 (1-204)||(100-303)
[»] scaffold0054 (2 HSPs)
scaffold0054 (3-101)||(33441-33539)
scaffold0054 (1-101)||(39790-39890)
[»] scaffold0129 (2 HSPs)
scaffold0129 (36-96)||(10486-10546)
scaffold0129 (31-130)||(33551-33650)
[»] chr5 (5 HSPs)
chr5 (30-154)||(32642902-32643026)
chr5 (30-94)||(42413999-42414063)
chr5 (30-95)||(39724570-39724635)
chr5 (34-95)||(15807722-15807783)
chr5 (38-106)||(42637357-42637425)
[»] chr3 (1 HSPs)
chr3 (32-96)||(5162455-5162519)
[»] chr1 (1 HSPs)
chr1 (30-101)||(368801-368872)
[»] chr2 (1 HSPs)
chr2 (72-125)||(7429022-7429075)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 9581957 - 9582167
Alignment:
Q  4 ataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcg 103  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  9581957 ataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcg 9582056  T
Q  104 tgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtat 203  Q
    | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  9582057 tctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatgagggtat 9582156  T
Q  204 gtatgttatga 214  Q
    |||||||||||    
T  9582157 gtatgttatga 9582167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 9587652 - 9587862
Alignment:
Q  4 ataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcg 103  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  9587652 ataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcg 9587751  T
Q  104 tgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtat 203  Q
    | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  9587752 tctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatgagggtat 9587851  T
Q  204 gtatgttatga 214  Q
    |||||||||||    
T  9587852 gtatgttatga 9587862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 9569298 - 9569099
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||||||||| ||||||||||  |||||||| |||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||    
T  9569298 ccgataggacgctcaatgcaagacaacggtccaacaaggaagagtttggtccacgattccttaatgccatattcacccaaaatcgatatgtgaaaattag 9569199  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 200  Q
    |||| |||||||||||||||||||| ||||||| ||| || |||||  ||||||||||||||||||  |||| ||||||||||||||| |||||||||||    
T  9569198 tcgtctcttcatgatatgagatcaacgcaatggccccgtttaacaccaccaagtttatccacaatgcttgaacatcgaaacaatcatccaagtatgaggg 9569099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9593747 - 9593960
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    ||||| |||||||||| | ||||||||  ||| ||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  9593747 ccgatgggacgctcaatgaaagacaacggtccgacaatgaagaaattggtccacgattcctttataccgtattcacccaaaattgatatctgaaaattag 9593846  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 200  Q
    | || |||| |||||||||||||||||||| ||||||||| |||||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  9593847 ttgtctctttatgatatgagatcaatgcaaaggacccatttaacaccaccaagtttatccacaatgcgtgaagatcgaaacaatcatccaagtatgaggg 9593946  T
Q  201 tatgtatgttatga 214  Q
     |||  ||||||||    
T  9593947 aatgggtgttatga 9593960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9602556 - 9602763
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||||||||| ||||||||||  ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  9602556 ccgataggacgctcaatgcaagacaacgatccaacattaaagagtttggtccacgactcctttataccgtattcacccaaaattgatatttgaaaattat 9602655  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 200  Q
    |||| |||| ||||||||||||||||| || ||||||||| |||||  ||||||||||||||||||        | |||||||||||||||||| |||||    
T  9602656 tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaatg------ctttgaaacaatcatctaagtacgaggg 9602749  T
Q  201 tatgtatgttatga 214  Q
    ||||  ||||||||    
T  9602750 tatgggtgttatga 9602763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 54295052 - 54295265
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    ||||||||| |||||||  ||||||||  |||||||||||| |||||||||||||| ||  | | |||  ||||||||||||||||||||||||||||||    
T  54295052 ccgataggatgctcaacataagacaacggtccaacaatgaaaagtttggtccacgattctatcacaccgaattcacccaaaattgatatgtgaaaattag 54295151  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 200  Q
    | |  ||||||||||||||||||||||||||| ||||||| |  || |||||| ||||||||||||  |||| ||| |||||||||||||||| |||||     
T  54295152 tggactcttcatgatatgagatcaatgcaatgcacccatttagtaccgccaaggttatccacaatgcttgaacatcaaaacaatcatctaagtttgagga 54295251  T
Q  201 tatgtatgttatga 214  Q
    ||||  ||||||||    
T  54295252 tatgggtgttatga 54295265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 37898014 - 37897848
Alignment:
Q  38 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccc 137  Q
    ||||||||||||||||||| ||||| ||||||  ||| ||||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||| |    
T  37898014 tgaagagtttggtccacgattccttcataccaagttcgcccaaaactgatacgtgaaaagtagtcgtctcttcatgatatgagaacaatgcaatggactc 37897915  T
Q  138 attaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatg 204  Q
    ||  ||||| ||||||||||||||||| |  | || ||| |||||||| || |||| ||||||||||    
T  37897914 atataacaccgccaagtttatccacaaagctttaacatcaaaacaatcgtccaagtctgagggtatg 37897848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 9574276 - 9574216
Alignment:
Q  154 tttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatgtatgttatga 214  Q
    |||||||||||||  |||| |||||||| ||||||||||||||||||||||  ||||||||    
T  9574276 tttatccacaatgcttgaacatcgaaactatcatctaagtatgagggtatgggtgttatga 9574216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 29012938 - 29012773
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||||||| || ||||| | |||  | || |||||||||||||||||||||||||    
T  29012938 ccgataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaaattag 29012839  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatg 166  Q
    |||| |||| ||||||||||| |||||||||||||||||| || || |||||||||| ||||||||    
T  29012838 tcgtctctttatgatatgagaccaatgcaatggacccatttaataccgccaagtttaaccacaatg 29012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 29131411 - 29131254
Alignment:
Q  4 ataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcg 103  Q
    |||||||||||||||| ||||||   ||||||||||||||  ||||||||||| || ||||| ||| |||||||||||||||||||||||||| |||| |    
T  29131411 ataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaaagtagttg 29131312  T
Q  104 tgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 161  Q
    || ||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  29131311 tgccttcatgatatgacatcaatgcaatggacacattcaacactgccaagtttatcca 29131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 29145373 - 29145199
Alignment:
Q  30 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgca 129  Q
    ||||| ||| |||||||||||||| || ||||| |||||  || |||||||||||||||||||||||||||| || | ||||||||||||||||||||||    
T  29145373 tccaagaataaagagtttggtccatgattccttcatacctaatccacccaaaattgatatgtgaaaattagtagtttgttcatgatatgagatcaatgca 29145274  T
Q  130 atggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatg 204  Q
    ||| |  |||| | ||| |||| ||||||||||||||  | || |||||||||||||||||||| ||||||||||    
T  29145273 atgaaatcatttatcactgccaggtttatccacaatgcttcaacatcgaaacaatcatctaagtctgagggtatg 29145199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 29300182 - 29300023
Alignment:
Q  3 gataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtc 102  Q
    |||||||||||  ||||||| ||||  ||||||| ||||||| ||||||||||| ||||||||||     |||||||||||||||||||||||| |||||    
T  29300182 gataggacgctggacgcaagccaacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtagtc 29300083  T
Q  103 gtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 162  Q
    || | ||  ||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  29300082 gtctttttttgaaatgagatcaaggcaatggacccatttaacacagccaagtttatccac 29300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29152101 - 29152262
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||||||||||| ||| ||||  |||||| |||||||||||| ||||||| ||  | | |||   || ||||||||||||||   ||||| |||    
T  29152101 ccgataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccacgattctctgaaaccgagttgacccaaaattgatacacgaaaagtag 29152200  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 162  Q
    |||| ||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  29152201 tcgtctcttcattatatgagatcaatgctatggacccatttaacacacccaagtttatccac 29152262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 32740715 - 32740823
Alignment:
Q  30 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgca 129  Q
    ||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||||| | ||||| |||| ||||||||||||| ||||||||| |||    
T  32740715 tccaacaatgaagagtttggtccacgattcctttatgccgaattcacccaaaattgatacgagaaaagtagttgtgtcttcatgatgtgagatcaaggca 32740814  T
Q  130 atggaccca 138  Q
    ||| |||||    
T  32740815 atgaaccca 32740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 32744835 - 32744992
Alignment:
Q  4 ataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcg 103  Q
    ||||| || |||||||||| |||   ||||| | ||||||| |||||||| || || || ||||||   ||||||| |||||||||||||||| ||||||    
T  32744835 ataggccgatcaacgcaaggcaatggtccaatagtgaagagattggtccatgattctttcataccaatctcacccataattgatatgtgaaaagtagtcg 32744934  T
Q  104 tgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 161  Q
    | | ||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  32744935 tcttttcataatatgagatcaatgcaatggacccatttaacaccgccaagtttctcca 32744992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 32960708 - 32960865
Alignment:
Q  4 ataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcg 103  Q
    |||||||||||||| |||| |||   || |||||| ||||||||| |||| || ||||| |||||   |||| ||||||||||||  |||||| ||||||    
T  32960708 ataggacgctcaacacaaggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaaaagtagtcg 32960807  T
Q  104 tgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 161  Q
    | ||||||   | ||||| |||||||||||||||||| | ||| ||||||||||||||    
T  32960808 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 32960865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 34278419 - 34278580
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||||||||||| ||| ||||  |||||| |||||||||||| |||| || || || | |||   || ||||||||| ||||   ||||| |||    
T  34278419 ccgataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccaagattctttgaaaccgagttgacccaaaatcgatacacgaaaagtag 34278518  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 162  Q
    || | |||| |||||||| ||||||||| ||||||||||| |||||  ||||||||||||||    
T  34278519 tcatctctttatgatatgtgatcaatgctatggacccatttaacaccaccaagtttatccac 34278580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 29124217 - 29124094
Alignment:
Q  38 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccc 137  Q
    ||||||| |||||||| || ||||| |||||    ||||||| ||||||||| |||||| ||||| | | |||||||||||||| ||||||||||| |||    
T  29124217 tgaagagcttggtccatgattccttcataccgatctcacccagaattgatatctgaaaagtagtcttcttttcatgatatgagaacaatgcaatggtccc 29124118  T
Q  138 attaaacacagccaagtttatcca 161  Q
    ||| ||||| ||||||||| ||||    
T  29124117 atttaacactgccaagtttctcca 29124094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 34282024 - 34281821
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||||||||||| ||| ||||  |||||| || ||||||||| ||||||| || || | |||   || ||||||||||||||   ||||| ||     
T  34282024 ccgataggacgctcaacgtaaggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgatacacgaaaagtac 34281925  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 200  Q
    | || |||| | |||||||||||||||| ||| ||||||| |||||  |||||||| |||||  ||  | || ||| ||||||||||||| || || |||    
T  34281924 ttgtctctttacgatatgagatcaatgctatgtacccatttaacaccaccaagtttttccactttgctttaacatcaaaacaatcatctacgtctggggg 34281825  T
Q  201 tatg 204  Q
    ||||    
T  34281824 tatg 34281821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 34258303 - 34258428
Alignment:
Q  78 caaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcg 177  Q
    ||||||||||||||||||| | || || | ||||| ||||||||  || |||||| ||||||| ||||| |||||||||||||||  ||  | || |||     
T  34258303 caaaattgatatgtgaaaagttgtagttttttcattatatgagagtaaggcaatgaacccatttaacaccgccaagtttatccactttgctttaacatca 34258402  T
Q  178 aaacaatcatctaagtatgagggtat 203  Q
    ||||||||||| | ||||||||||||    
T  34258403 aaacaatcatcaacgtatgagggtat 34258428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 29137331 - 29137227
Alignment:
Q  58 tcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 157  Q
    ||||| ||||||  |||||||||||| ||||  |||||| ||| | | | |||||||||||| |||||||||||||||  ||| |||||  |||||||||    
T  29137331 tccttcataccaacttcacccaaaatagatacatgaaaagtagccatcttttcatgatatgatatcaatgcaatggacaaatttaacaccaccaagttta 29137232  T
Q  158 tccac 162  Q
    |||||    
T  29137231 tccac 29137227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 25520027 - 25520113
Alignment:
Q  74 cacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 161  Q
    |||| |||||||||||||||||| || || | | |||||||| ||||||||| |||||||||| ||| |||||  |||| ||||||||    
T  25520027 cacctaaaattgatatgtgaaaa-taatcatattttcatgatgtgagatcaacgcaatggacctatttaacaccaccaattttatcca 25520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 19697525 - 19697569
Alignment:
Q  82 attgatatgtgaaaattagtcgtgtcttcatgatatgagatcaat 126  Q
    ||||||||||||||| ||||||| || |||||| |||||||||||    
T  19697525 attgatatgtgaaaagtagtcgtctcatcatgaaatgagatcaat 19697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 25319361 - 25319437
Alignment:
Q  81 aattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 157  Q
    |||||||| ||||||| ||||| | | |||||||||||||||||| ||||   ||||||| |||||  |||||||||    
T  25319361 aattgatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta 25319437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 25528826 - 25528950
Alignment:
Q  38 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccc 137  Q
    |||||||| || ||||| | ||||| ||| ||  |||| | ||||||||||||||| || ||||  | | |||||||||| ||||||| ||||||||||     
T  25528826 tgaagagtatgttccaccattccttcatatcagcttcatctaaaattgatatgtgataagtagttatattttcatgatattagatcaaagcaatggacct 25528925  T
Q  138 attaaacacagccaagtttatccac 162  Q
    |||  ||||  |||| |||||||||    
T  25528926 atttgacaccaccaaatttatccac 25528950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 26149054 - 26149130
Alignment:
Q  81 aattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 157  Q
    |||||||| ||||||| ||||| | | |||||||||||||||||| ||||   ||||||| |||||  |||||||||    
T  26149054 aattgatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta 26149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 42446442 - 42446242
Alignment:
Q  2 cgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagt 101  Q
    |||||||||||||||| |||  ||||  ||||||||||| |||||||||||| || ||||| ||| ||  |||||||||||||||||||||||||  ||     
T  42446442 cgataggacgctcaacacaatgcaacggtccaacaatgacgagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaaa-aagc 42446344  T
Q  102 cgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggt 201  Q
    ||| | ||||||| |||||||||| ||||||||| | || |||||| |||||||||||||| ||     || || ||||||| ||||||||| |||||||    
T  42446343 cgtcttttcatgaaatgagatcaaggcaatggactcgtttaacacaaccaagtttatccacgattctccaacatagaaacaaccatctaagtctgagggt 42446244  T
Q  202 at 203  Q
    ||    
T  42446243 at 42446242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 16197 - 16400
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||| |  ||||||||||||   ||||| | ||||||| ||| |||| || |||||  |||||  ||||||||||||||||||||||||| |||    
T  16197 ccgataggacacctaacgcaagacaatggtccaatagtgaagagattgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaagtag 16296  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 200  Q
    || |   ||||||||| ||||||||||||||| || |||| |||   ||||||||||||||  |||  | || ||| |||||||||||||||| ||||||    
T  16297 tccttggttcatgataagagatcaatgcaatgcactcatttaaccgtgccaagtttatccatgatgcttcaacatcaaaacaatcatctaagtttgaggg 16396  T
Q  201 tatg 204  Q
    ||||    
T  16397 tatg 16400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 303 - 100
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||  |||||||||||||||   ||||| | ||||| | |||||||| || || ||  | |||  ||||||||||||||||||||||||| |||    
T  303 ccgataggaaactcaacgcaagacaatggtccaatagtgaagtgattggtccatgattcattctttccaatttcacccaaaattgatatgtgaaaagtag 204  T
Q  101 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 200  Q
    || |   | ||||||| ||||||||||||||| || |||| |||   ||||||||||||||  |||  | || ||| |||||||||||||||| ||||||    
T  203 tccttggtacatgataagagatcaatgcaatgcactcatttaaccatgccaagtttatccaggatgcttcaacatcaaaacaatcatctaagtttgaggg 104  T
Q  201 tatg 204  Q
    ||||    
T  103 tatg 100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 33441 - 33539
Alignment:
Q  3 gataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagt 101  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| || ||   |||||||||||||| ||||| |||| ||||    
T  33441 gataggacgctcaacgcaagacaacggtccaacagtgaagagtttggtccacgattccttaatgccgagttcacccaaaattgctatgtcaaaagtagt 33539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 39790 - 39890
Alignment:
Q  1 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 100  Q
    |||||||||||||||||||||||||||  ||||||| | ||||||||| ||||||| ||||| || ||   |||||||||||||| |||||||||| |||    
T  39790 ccgataggacgctcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaagtag 39889  T
Q  101 t 101  Q
    |    
T  39890 t 39890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 10546 - 10486
Alignment:
Q  36 aatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaa 96  Q
    |||||||||||| ||||| |||||||| | ||||  |||||||||||||||||||||||||    
T  10546 aatgaagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaaa 10486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 33551 - 33650
Alignment:
Q  31 ccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaa 130  Q
    |||| ||| |||||||| ||||| |||||||| | ||||  |||||||||||| || ||||||||| ||||| | ||| |||  | ||||||||||||||    
T  33551 ccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaaagtagtcatttctacatagtttgagatcaatgcaa 33650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 32643026 - 32642902
Alignment:
Q  30 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgca 129  Q
    ||||||||||||||||||| |||| || ||||| | |    |||||| |||||||||||||| |||| ||| | | | ||| ||||||| |||||| |||    
T  32643026 tccaacaatgaagagtttgatccatgattccttcacagttaattcactcaaaattgatatgttaaaagtagccatttgttcttgatatgtgatcaacgca 32642927  T
Q  130 atggacccattaaacacagccaagt 154  Q
    ||||| ||||| ||||| |||||||    
T  32642926 atggatccatttaacaccgccaagt 32642902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 42414063 - 42413999
Alignment:
Q  30 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaa 94  Q
    ||||||||| |||||||| ||||| |||||||||| |||| |||| ||||||||||| |||||||    
T  42414063 tccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaa 42413999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 39724570 - 39724635
Alignment:
Q  30 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaa 95  Q
    |||||||||||||||||| ||||| || || ||||||||   ||| ||||||||||||||||||||    
T  39724570 tccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaa 39724635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 15807722 - 15807783
Alignment:
Q  34 acaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaa 95  Q
    ||||| |||||||||||||| ||||| || |  |||  ||||||||||||||||||||||||    
T  15807722 acaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 15807783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 42637357 - 42637425
Alignment:
Q  38 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgt 106  Q
    |||||||||||||||| || ||||| |  ||   ||||||||||||||||||||||||| |||| ||||    
T  42637357 tgaagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagttgtgt 42637425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 5162519 - 5162455
Alignment:
Q  32 caacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaa 96  Q
    ||||| ||||||||||| |||| || ||||| | ||||  |||||||||||||||||||||||||    
T  5162519 caacagtgaagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaa 5162455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 368872 - 368801
Alignment:
Q  30 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagt 101  Q
    ||||||||||||||||||| |||| || ||||| | ||||  |||||| | |||||||||||||||| ||||    
T  368872 tccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 7429022 - 7429075
Alignment:
Q  72 ttcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaa 125  Q
    ||||||||||| ||||||||||||| ||||| | ||||||| |||||| |||||    
T  7429022 ttcacccaaaactgatatgtgaaaagtagtcttctcttcataatatgaaatcaa 7429075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University