View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_low_51 (Length: 202)

Name: NF6855_low_51
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_low_51
NF6855_low_51
[»] chr1 (12 HSPs)
chr1 (1-202)||(2007231-2007432)
chr1 (3-202)||(2012716-2012916)
chr1 (3-190)||(2020472-2020656)
chr1 (3-193)||(2011219-2011406)
chr1 (4-185)||(1793464-1793642)
chr1 (1-161)||(4334135-4334295)
chr1 (1-161)||(3379489-3379649)
chr1 (69-159)||(3373534-3373624)
chr1 (1-190)||(3362478-3362664)
chr1 (1-96)||(3342012-3342107)
chr1 (1-51)||(4322357-4322407)
chr1 (18-133)||(6600985-6601100)
[»] chr4 (1 HSPs)
chr4 (1-200)||(21238241-21238437)
[»] chr2 (3 HSPs)
chr2 (4-202)||(20935195-20935390)
chr2 (1-180)||(20953730-20953906)
chr2 (1-159)||(20924191-20924349)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2007231 - 2007432
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  2007231 tggctgcaggtgctgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaac 2007330  T
Q  101 tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgcttgctgat 200  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2007331 tgctctatgtgtgttcaggagctcgcctaatcttaaagaattaaatatatttgtgagtactactcatttagtttggctcgacttttctttgcttgctgat 2007430  T
Q  201 tt 202  Q
    ||    
T  2007431 tt 2007432  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 2012716 - 2012916
Alignment:
Q  3 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactg 102  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||| |||||||||||||    
T  2012716 gctgcaggtgttgtgccagtaaagcttcctacaccttgtattaatctaacgtatctttggttaagtataaacttctacgacttgaaagaaatttcaactg 2012815  T
Q  103 ctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttga----cttttctttgcttgctg 198  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||   |||||||||||||||||||||    |||||||||| ||||||    
T  2012816 ctctatgtgtgttcagaagctcgcctaatcttaaagaattaaatatatttgtgag---tactcatttagtttggcttgactggcttttctttggttgctg 2012912  T
Q  199 attt 202  Q
    ||||    
T  2012913 attt 2012916  T

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Target: chr1; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 2020472 - 2020656
Alignment:
Q  3 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  2020472 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaactg 2020571  T
Q  103 ctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttcttt 190  Q
    |||||||||||||||||||||| ||||||||| || || || | ||| |||||||   |||||||||| |||| ||||||||||||||    
T  2020572 ctctatgtgtgttcagaagctcgcctaatcttaaaaaactagaaataattgtgag---tactcatttactttgacttgacttttcttt 2020656  T

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Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 2011219 - 2011406
Alignment:
Q  3 gctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactg 102  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||  | ||| ||| | |||||||||||| |||| |||||||||||||||||||    
T  2011219 gctgcaggtgttgtgccactaaagcttcctacaccttgtattaatctaatgtctctatggttaagtataaacttcaatgagttgaaggaaatttcaactg 2011318  T
Q  103 ctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgct 193  Q
    ||||| |||||||||||||||| ||||||||| ||||| |||| |||||||||||   |||||||||| ||||  ||||||||||||||||    
T  2011319 ctctaagtgtgttcagaagctcgcctaatcttaaagaactaaaaatatttgtgag---tactcatttactttgaattgacttttctttgct 2011406  T

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Target: chr1; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 1793464 - 1793642
Alignment:
Q  4 ctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactgc 103  Q
    ||||||||||||| |||  || |||||||||||||||||| ||| |||||||||||||| | || ||||||||| |||||||||||||||||||| ||||    
T  1793464 ctgcaggtgttgtgccaacaatgcttcctacaccttgtatcaatataacatatctttggttaagcataaacttcaatgacttgaaggaaatttcagctgc 1793563  T
Q  104 tctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttt 185  Q
    |||||| ||||| |||||||| ||||||||| ||||| || ||||||| |||||   | |||||||||||||||||||||||    
T  1793564 tctatgcgtgtttagaagctcgcctaatcttaaagaactacatatattagtgag---tgctcatttagtttggcttgacttt 1793642  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 4334295 - 4334135
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac 100  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||||   | |  ||||||||| || || || ||||||||||  |    
T  4334295 tggctgcaggtgttttgccagtaaagcttcctacaccttgtattaatctaagttttctttccttaaccataaacttcgataacatggaggaaatttcggc 4334196  T
Q  101 tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtact 161  Q
     ||||| ||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||    
T  4334195 cgctctttgtgtgttcagaagctcacctaaccttcaaaaattaaaaatatctgtgagtact 4334135  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 3379489 - 3379649
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggctta-gtataaacttctatgacttgaaggaaatttcaa 99  Q
    |||||||||||| |||  |||||||||||||||||||||||||  ||||||  |||||||  |||| ||||||||||| ||| |||||||||||||||      
T  3379489 tggctgcaggtgatgtatcagtaaagcttcctacaccttgtatcgatctaagttatctttc-cttatgtataaacttcaatgtcttgaaggaaatttcgg 3379587  T
Q  100 ctgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtact 161  Q
    |||| || ||  || |||||||||||||||| ||| || ||||  | |||||||||||||||    
T  3379588 ctgccctttgcttgctcagaagctcccctaaccttaaaaaattggaaatatttgtgagtact 3379649  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 3373534 - 3373624
Alignment:
Q  69 ataaacttctatgacttgaaggaaatttcaactgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagta 159  Q
    ||||||||| |||||||||||||||||||| ||||||| ||  || |||||||||| ||||||||| || ||||| | |||||||||||||    
T  3373534 ataaacttcaatgacttgaaggaaatttcagctgctctttgcttgctcagaagctcacctaatcttaaaaaattagaaatatttgtgagta 3373624  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 3362478 - 3362664
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggctta-gtataaacttctatgacttgaaggaaatttcaa 99  Q
    |||||||||||||||| ||| |||||||||| ||||||||||| ||||| | | ||||||  |||| | ||| ||||| ||||||||||| ||||||       
T  3362478 tggctgcaggtgttgtgccaataaagcttcccacaccttgtatcaatctcagacatcttt-ccttatgcatagacttcgatgacttgaagaaaattttgg 3362576  T
Q  100 ctgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttcttt 190  Q
    ||||||| ||  || ||| |||||| |||||||||| | ||||  | ||| |||||||   ||||| ||||||||||||||||||| ||||    
T  3362577 ctgctctttgcttgctcaaaagctcacctaatcttcgaaaattggaaataattgtgag---tactcgtttagtttggcttgactttgcttt 3362664  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3342012 - 3342107
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaattt 96  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||| |  | || |  | || ||||||||| ||||||||||| ||||||    
T  3342012 tggctgcaggtattgtgccagtaaagcttcctacaccttgtatcaatctaaaaatttttcgtgtaagcataaacttcaatgacttgaagaaaattt 3342107  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4322407 - 4322357
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaa 51  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  4322407 tggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaa 4322357  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 6601100 - 6600985
Alignment:
Q  18 ccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactgctctatgtgtgttca 117  Q
    ||||||||||||||||| ||||| ||| ||||||  |||||||   |  | |||||||||||||| |  |||||||||||| ||||||| ||  | ||||    
T  6601100 ccagtaaagcttcctaccccttgcattgatctaagttatctttccatacgcataaacttctatgattcaaaggaaatttcagctgctctttgccttttca 6601001  T
Q  118 gaagctcccctaatct 133  Q
    ||||||| ||||||||    
T  6601000 gaagctcacctaatct 6600985  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 21238241 - 21238437
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||   |||||| | | |  ||||||||| |||||||||||||||| ||  |    
T  21238241 tggctgcaggtgtcgttccagtaaagcttcctacaccttgtattcatctaagccatcttttgttaaacataaacttcaatgacttgaaggaaatctcggc 21238340  T
Q  101 tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgcttgctgat 200  Q
    |||||| ||  || |||||||||| |||||||| | | ||||||| |||| ||||||   ||||| |||| ||||| ||  |||| ||||||||||||||    
T  21238341 tgctctctgcttgctcagaagctcacctaatctgcgaaaattaaaaatatctgtgag---tactcgtttaatttggttttgctttgctttgcttgctgat 21238437  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 20935195 - 20935390
Alignment:
Q  4 ctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaactgc 103  Q
    ||||||||||| | |||  |||||||||||||||||||||  ||||||   ||||||   | || ||||||||| |||||||||||||||||||  ||||    
T  20935195 ctgcaggtgttttgccaaaaaagcttcctacaccttgtatggatctaagtcatctttccttgagcataaacttcgatgacttgaaggaaatttcggctgc 20935294  T
Q  104 tctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttgacttttctttgcttgctgattt 202  Q
    ||| ||  || |||||||||| |||||||||| | ||||| | |||||||||||   |||||||||||||| |||||  ||  ||||||||||||||||    
T  20935295 tctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgag---tactcatttagtttagcttggtttcactttgcttgctgattt 20935390  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 20953730 - 20953906
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggctta-gtataaacttctatgacttgaaggaaatttcaa 99  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||  |||||||  |||| | ||||||||| |  || | |||||||||||      
T  20953730 tggctgcaggtgttttgccagtaaagcttcctacaccttgtatttatctaagctatcttt-ccttatgcataaacttcgacaacctaaaggaaatttcgg 20953828  T
Q  100 ctgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagtactactcatttagtttggcttg 180  Q
    ||||||| ||  || |||||||||| |||||||||| | ||||| | |||||||||||   |||||||||||||| |||||    
T  20953829 ctgctctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgag---tactcatttagtttagcttg 20953906  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 20924191 - 20924349
Alignment:
Q  1 tggctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggcttagtataaacttctatgacttgaaggaaatttcaac 100  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||   |  |  |||||||| | ||||||| |||||||||  |    
T  20924191 tggctgcaggtgtggtgccagtaaagcttcctacactttgtattaatctaacatttctttccatatgcctaaacttcaacgacttgacggaaatttcggc 20924290  T
Q  101 tgctctatgtgtgttcagaagctcccctaatcttcaagaattaaatatatttgtgagta 159  Q
    || ||| ||  || ||| |||||| ||||||||||||  ||| || || ||||||||||    
T  20924291 tgttctttgcttgctcaaaagctcgcctaatcttcaaacattcaaaatgtttgtgagta 20924349  T

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