View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_low_9 (Length: 505)

Name: NF6855_low_9
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_low_9
NF6855_low_9
[»] chr5 (2 HSPs)
chr5 (6-317)||(20955641-20955962)
chr5 (435-479)||(20956080-20956124)
[»] chr2 (3 HSPs)
chr2 (6-317)||(27162226-27162547)
chr2 (18-139)||(22911160-22911281)
chr2 (435-479)||(27162064-27162108)
[»] chr1 (4 HSPs)
chr1 (6-317)||(1976990-1977311)
chr1 (6-317)||(1984356-1984677)
chr1 (435-481)||(1984189-1984235)
chr1 (435-479)||(1976825-1976869)
[»] scaffold0764 (2 HSPs)
scaffold0764 (6-314)||(3108-3426)
scaffold0764 (442-492)||(2936-2986)
[»] scaffold0313 (4 HSPs)
scaffold0313 (6-314)||(3189-3507)
scaffold0313 (6-314)||(17346-17664)
scaffold0313 (442-492)||(3629-3679)
scaffold0313 (442-492)||(17786-17836)
[»] scaffold1531 (1 HSPs)
scaffold1531 (18-314)||(966-1272)
[»] scaffold0059 (1 HSPs)
scaffold0059 (30-136)||(43053-43159)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 20955641 - 20955962
Alignment:
Q  6 atgagatggacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 105  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20955641 atgagattcacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacact 20955740  T
Q  106 cagttcagaatgttaagaagccaagtaagaagaga----------aagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 195  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20955741 cagttcagaatgttaagaagccaagtaagaagagaaagcttgagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactcttctgaaaa 20955840  T
Q  196 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 295  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20955841 agaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaatcctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 20955940  T
Q  296 cttcagcaaaatgcagaagatc 317  Q
    ||||||||||||||||||||||    
T  20955941 cttcagcaaaatgcagaagatc 20955962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 20956080 - 20956124
Alignment:
Q  435 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20956080 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 20956124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 27162547 - 27162226
Alignment:
Q  6 atgagatggacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 105  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27162547 atgagattcacatcaaaaactctagctcaactccacataaccacctccagcatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacact 27162448  T
Q  106 cagttcagaatgttaagaagccaagtaagaagagaaag----------tcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27162447 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 27162348  T
Q  196 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 295  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27162347 agaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatataaatcttttccaagatattgctgaaaatgcaaaggaaatc 27162248  T
Q  296 cttcagcaaaatgcagaagatc 317  Q
    ||||||||||||||||||||||    
T  27162247 cttcagcaaaatgcagaagatc 27162226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 22911281 - 22911160
Alignment:
Q  18 tcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatg 117  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| || ||||||||    
T  22911281 tcaaaaacccttgctcaacttcacataaccacctccaacatgcctactcctgtgtcctcacaaacaactagctatgtcaagagacacttagctcagaatg 22911182  T
Q  118 ttaagaagccaagtaagaagag 139  Q
    |||||||| |||||||||||||    
T  22911181 ttaagaagacaagtaagaagag 22911160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 27162108 - 27162064
Alignment:
Q  435 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27162108 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 27162064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 1977311 - 1976990
Alignment:
Q  6 atgagatggacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 105  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1977311 atgagattcacatcaaaaactctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 1977212  T
Q  106 cagttcagaatgttaagaagccaagtaagaagagaaag----------tcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1977211 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 1977112  T
Q  196 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1977111 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatc 1977012  T
Q  296 cttcagcaaaatgcagaagatc 317  Q
    || || ||||||||||||||||    
T  1977011 ctgcaacaaaatgcagaagatc 1976990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 1984677 - 1984356
Alignment:
Q  6 atgagatggacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 105  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1984677 atgagattcacatcaaaaactctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 1984578  T
Q  106 cagttcagaatgttaagaagccaagtaagaagagaaag----------tcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1984577 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 1984478  T
Q  196 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1984477 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatc 1984378  T
Q  296 cttcagcaaaatgcagaagatc 317  Q
    || || ||||||||||||||||    
T  1984377 ctgcaacaaaatgcagaagatc 1984356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 1984235 - 1984189
Alignment:
Q  435 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactgat 481  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  1984235 ttgctgcaatttctgaagaggaacttcagaatgttgactcaactgat 1984189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 1976869 - 1976825
Alignment:
Q  435 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 479  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  1976869 ttgctgcaatttctgaagaggaacttcagaatgttgactcaactg 1976825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 3426 - 3108
Alignment:
Q  6 atgagatggacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 105  Q
    |||||||  |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||    
T  3426 atgagattcacatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacact 3327  T
Q  106 cagttcagaatgttaagaagccaagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 195  Q
    ||| ||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  3326 cagctcagaatgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaa 3227  T
Q  196 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 295  Q
     || |  |||||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| ||||||    
T  3226 agaggcatctgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatc 3127  T
Q  296 cttcagcaaaatgcagaag 314  Q
    |||||  || |||||||||    
T  3126 cttcaagaagatgcagaag 3108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 492
Target Start/End: Complemental strand, 2986 - 2936
Alignment:
Q  442 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 492  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  2986 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 148; Significance: 7e-78; HSPs: 4)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 3189 - 3507
Alignment:
Q  6 atgagatggacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 105  Q
    |||||||  |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||    
T  3189 atgagattcacatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacact 3288  T
Q  106 cagttcagaatgttaagaagccaagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 195  Q
    ||| ||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  3289 cagctcagaatgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaa 3388  T
Q  196 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 295  Q
     || |  |||||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| ||||||    
T  3389 agaggcatctgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatc 3488  T
Q  296 cttcagcaaaatgcagaag 314  Q
    |||||  || |||||||||    
T  3489 cttcaagaagatgcagaag 3507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 17346 - 17664
Alignment:
Q  6 atgagatggacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 105  Q
    |||||||  |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||    
T  17346 atgagattcacatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacact 17445  T
Q  106 cagttcagaatgttaagaagccaagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 195  Q
    ||| ||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  17446 cagctcagaatgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaa 17545  T
Q  196 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 295  Q
     || |  |||||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| ||||||    
T  17546 agaggcatctgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatc 17645  T
Q  296 cttcagcaaaatgcagaag 314  Q
    |||||  || |||||||||    
T  17646 cttcaagaagatgcagaag 17664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 3629 - 3679
Alignment:
Q  442 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 492  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  3629 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 17786 - 17836
Alignment:
Q  442 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 492  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  17786 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 17836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1531 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold1531
Description:

Target: scaffold1531; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 966 - 1272
Alignment:
Q  18 tcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatg 117  Q
    ||||| ||||| ||||||||  ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| ||||||||    
T  966 tcaaagactctcgctcaacttaacataaccacctccaacatgcctacccctgtgtcttctcaaacaactagctctttcaagagacactcagctcagaatg 1065  T
Q  118 ttaagaagccaagtaagaa----------gagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctga 207  Q
    | |||||| ||| ||||||          ||||||||||||||  | |||||| |||| ||| |  | ||  | ||||||||  |||| ||||  ||| |    
T  1066 tcaagaagtcaaataagaagaggaaacttgagaaagtcaggaacttatcaagcgttcagagagataaagagaagaactctccctaaaaagaagcatctaa 1165  T
Q  208 tgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaat 307  Q
    |||||| |||||||| || |||| |||||||||||||||| ||| ||| ||||| |||||||  |||||||||  |||||  ||||||||||| ||||||    
T  1166 tgatgagatggctgactctccactaaaggatggtgaacccactgctgttaatctcttccaaggaattgctgaacgtgcaagagaaatccttcaacaaaat 1265  T
Q  308 gcagaag 314  Q
    |||||||    
T  1266 gcagaag 1272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 43159 - 43053
Alignment:
Q  30 gctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagccaa 129  Q
    |||||||| |||||||||||| ||||||||||||||| ||| ||||   || ||||| ||||| |||| ||||||||||  ||||| | |||||||| ||    
T  43159 gctcaacttcacataaccaccaccaacatgcctactcatgtatcctgagaagcaactggctctatcaagagacactcagaacagaaggataagaagctaa 43060  T
Q  130 gtaagaa 136  Q
    | |||||    
T  43059 ggaagaa 43053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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