View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6856_high_1 (Length: 689)

Name: NF6856_high_1
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6856_high_1
NF6856_high_1
[»] chr5 (15 HSPs)
chr5 (37-498)||(9618754-9619222)
chr5 (489-670)||(9617766-9617944)
chr5 (37-147)||(19969339-19969449)
chr5 (45-158)||(1347721-1347834)
chr5 (91-158)||(19807073-19807140)
chr5 (89-153)||(20112126-20112190)
chr5 (365-416)||(13712283-13712334)
chr5 (46-140)||(13711924-13712018)
chr5 (96-157)||(17392589-17392650)
chr5 (366-443)||(19806782-19806859)
chr5 (112-157)||(27358161-27358206)
chr5 (113-157)||(19653756-19653800)
chr5 (285-325)||(19806897-19806937)
chr5 (365-441)||(19969676-19969752)
chr5 (45-157)||(26536162-26536274)
[»] chr6 (1 HSPs)
chr6 (75-147)||(16258249-16258321)
[»] chr3 (4 HSPs)
chr3 (546-635)||(32225231-32225317)
chr3 (75-125)||(32226768-32226818)
chr3 (358-416)||(24890844-24890902)
chr3 (82-147)||(32241837-32241902)
[»] scaffold0009 (3 HSPs)
scaffold0009 (85-143)||(34169-34227)
scaffold0009 (85-143)||(21922-21980)
scaffold0009 (85-143)||(40799-40857)
[»] chr1 (1 HSPs)
chr1 (96-157)||(26052813-26052874)


Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 37 - 498
Target Start/End: Complemental strand, 9619222 - 9618754
Alignment:
Q  37 aatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtggg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619222 aatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatgttacatgttgttaaatgagatgaaacacattcaggaacatgatgtggg 9619123  T
Q  137 tatttccaatcctctttggtttctgaatcgcttgtccactgtcaatcaaaaataaaataggatttgttaaaacg-------agagaataaataaaaacca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||    
T  9619122 tatttccaatcctctttggtttctgaatcgcttgtccactgtcaatcaaaaataaaataggatttgttaaaacggttaaagagagaataaataaaagcca 9619023  T
Q  230 ttaacactatctacggacgtgacaaacaattacctttgaaatggtaaaatcttgaagtttgggacaactttggagcattttcattacatcatcccagtca 329  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9619022 ttaacactatctacggacgtgacaaacaattaccttcgaaatggtaaaatcttgaggtttgggacaactttggagcattttcattacatcatcccagtca 9618923  T
Q  330 aaaaggacatgaaaaatccaatatagtcgaagtacggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttt 429  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9618922 aaaaggacatgaaaaatccaatatagtcgaagtactgttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttt 9618823  T
Q  430 tccccatctgcaaaaatacaaacaaaatcaaataatagcttgttaagcaaaatagatgtataataaaag 498  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9618822 tccacaactgcaaaaatacaaacaaaatcaaataatagcttgttaagcaaaatagatgtataataaaag 9618754  T

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Target: chr5; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 489 - 670
Target Start/End: Complemental strand, 9617944 - 9617766
Alignment:
Q  489 ataataaaagagcatgcatcatatgatatatcttattacctcgagtacacttagatgttgcacattagaaactgctctgagtggaattacctcgaataaa 588  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  9617944 ataataaaagagcatgcataatatgatatatcttattacctcgagtacacttagatgttgcacattagaaactgctctgagtggaa---cctcgaataaa 9617848  T
Q  589 tgaatactagctttgatcaacttcggtaggggtttagagtaccctcctccagctgtaatgtttccggcacttgctgctttaa 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  9617847 tgaatactagctttgatcaacttcggtaggggtttagagtaccctcctccagctataatgcttccggcactttctgctttaa 9617766  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 19969339 - 19969449
Alignment:
Q  37 aatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtggg 136  Q
    ||||||| |||||||||||||||||| ||||||| || ||||||||  ||||||||||||||| | ||||||  |||||||||| |||||||||| ||||    
T  19969339 aatatacgttgcaaatcgaaaatcagcttccacagcttgatagtgtgtaatattacatgttgtaagatgagacaaaacacattcgggaacatgatatggg 19969438  T
Q  137 tatttccaatc 147  Q
    |||||||||||    
T  19969439 tatttccaatc 19969449  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 1347721 - 1347834
Alignment:
Q  45 ttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcca 144  Q
    |||||||||| ||||||| ||||||| || |||||||||  |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||| ||||    
T  1347721 ttgcaaatcggaaatcagcttccacagcttgatagtgtatgatattacatgttgtaagatgagaggaaacacattgaggaacatgatatgggtatatcca 1347820  T
Q  145 atcctctttggttt 158  Q
    |||| |||||||||    
T  1347821 atccgctttggttt 1347834  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 19807140 - 19807073
Alignment:
Q  91 acatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggttt 158  Q
    ||||||||||| || ||| | |||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  19807140 acatgttgttagattagaggtaacacattcaggaacatgatatgggtgtttccaatcctttgtggttt 19807073  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 20112190 - 20112126
Alignment:
Q  89 ttacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctcttt 153  Q
    ||||||||||| | | ||||  |||||||||||||||||| || |||||||||||||| ||||||    
T  20112190 ttacatgttgtgagacgagacaaaacacattcaggaacatcatatgggtatttccaattctcttt 20112126  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 13712283 - 13712334
Alignment:
Q  365 ggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttca 416  Q
    |||||||||||||||||| |||| | |  |||||||||||||||||||||||    
T  13712283 ggttaagttttcaaacacaggaaagcctttgtaatatgaattgatttcttca 13712334  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 13711924 - 13712018
Alignment:
Q  46 tgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatt 140  Q
    ||||||||| ||||||| ||||||| ||  ||||| || |||   ||| |||||||||||||| ||||||| || |||||||||||  |||||||    
T  13711924 tgcaaatcggaaatcagcttccacaacttcatagtttataattcgacaagttgttaaatgagaggaaacacctttaggaacatgatcagggtatt 13712018  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 17392650 - 17392589
Alignment:
Q  96 ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggtt 157  Q
    |||||| |||||| ||||||||||| |||||||||| ||| |||| ||||| |||| |||||    
T  17392650 ttgttagatgagacgaaacacattctggaacatgatctggatattcccaatgctctatggtt 17392589  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 19806859 - 19806782
Alignment:
Q  366 gttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgcaaa 443  Q
    ||||||||||||||||||| || | |  |||||||| |||||||||||||| ||| | || || || |||||||||||    
T  19806859 gttaagttttcaaacacggaaaagcctttgtaatataaattgatttcttcattggcaagatttgtctccatctgcaaa 19806782  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 27358161 - 27358206
Alignment:
Q  112 aacacattcaggaacatgatgtgggtatttccaatcctctttggtt 157  Q
    |||||| ||||||||||||| ||||||||||| ||| |||||||||    
T  27358161 aacacactcaggaacatgatctgggtatttcctatcatctttggtt 27358206  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 19653756 - 19653800
Alignment:
Q  113 acacattcaggaacatgatgtgggtatttccaatcctctttggtt 157  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||    
T  19653756 acacattcaggaacatgacatgggtatttccaatctgctttggtt 19653800  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 19806937 - 19806897
Alignment:
Q  285 agtttgggacaactttggagcattttcattacatcatccca 325  Q
    |||||||||||| ||||||||||||||| ||| ||||||||    
T  19806937 agtttgggacaattttggagcattttcactacctcatccca 19806897  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 19969676 - 19969752
Alignment:
Q  365 ggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgca 441  Q
    |||||||||| ||||||| |||| |||  |||||||||||||||||||| || | ||| || | | |||||||||||    
T  19969676 ggttaagtttccaaacactggaaagtctttgtaatatgaattgatttctgcattaggaagactatgccccatctgca 19969752  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 26536274 - 26536162
Alignment:
Q  45 ttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcca 144  Q
    |||||||||||||||| | |||  || ||  ||||| || |||  |||||||||| | ||||||   |||||  ||||||||||||| ||||||||||||    
T  26536274 ttgcaaatcgaaaatccgcttctgcagcttcatagtttataatgctacatgttgtaagatgagacctaacactctcaggaacatgatctgggtatttcca 26536175  T
Q  145 atcctctttggtt 157  Q
    ||| | |||||||    
T  26536174 atcatgtttggtt 26536162  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 16258249 - 16258321
Alignment:
Q  75 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 147  Q
    |||||| |||||| || |||||||||||||| ||||||||||| ||||||||   || |||||||||||||||    
T  16258249 gatagtctaaaattttgcatgttgttaaatgggatgaaacacactcaggaaccgtatatgggtatttccaatc 16258321  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 635
Target Start/End: Original strand, 32225231 - 32225317
Alignment:
Q  546 ttgcacattagaaactgctctgagtggaattacctcgaataaatgaatactagctttgatcaacttcggtaggggtttagagtaccctcc 635  Q
    |||||||||||||||| ||||||| ||||   | ||||||||| | ||| ||||||| |||||||| | || ||||||||||||||||||    
T  32225231 ttgcacattagaaactactctgagcggaa---catcgaataaacggatattagctttaatcaacttggataagggtttagagtaccctcc 32225317  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 32226818 - 32226768
Alignment:
Q  75 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaa 125  Q
    |||||| |||||| || |||||||||||||| |||||||||||||||||||    
T  32226818 gatagtctaaaattttgcatgttgttaaatgggatgaaacacattcaggaa 32226768  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 24890902 - 24890844
Alignment:
Q  358 gaagtacggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttca 416  Q
    ||||| ||||||||||||||||||| ||||   |  |||||||||||||||||||||||    
T  24890902 gaagttcggttaagttttcaaacacaggaaaacctttgtaatatgaattgatttcttca 24890844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 32241837 - 32241902
Alignment:
Q  82 taaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 147  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||   || ||||| |||||||||    
T  32241837 taaaattttgcatgttgttaaatgggatgaaacacaatcaggaaccgtatatgggtgtttccaatc 32241902  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 34227 - 34169
Alignment:
Q  85 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 143  Q
    ||||||||| ||||| | ||||||||||||||||||||||| ||||| | |||||||||    
T  34227 aatattacacgttgtaagatgagatgaaacacattcaggaatatgatttcggtatttcc 34169  T

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Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 21980 - 21922
Alignment:
Q  85 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 143  Q
    |||||| |||||||| | |||||| |||||||||||||||| ||||| | |||||||||    
T  21980 aatattgcatgttgtaagatgagacgaaacacattcaggaatatgatcttggtatttcc 21922  T

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Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 40857 - 40799
Alignment:
Q  85 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 143  Q
    |||||||  |||||| | |||||| |||||||||||||||||||||| | |||||||||    
T  40857 aatattaattgttgtaagatgagacgaaacacattcaggaacatgatcttggtatttcc 40799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 26052813 - 26052874
Alignment:
Q  96 ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggtt 157  Q
    |||||| |||||||||||||||||| |||||||||| ||| |||| ||||| |||| |||||    
T  26052813 ttgttagatgagatgaaacacattctggaacatgatctggatattcccaatgctctatggtt 26052874  T

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