View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_high_10 (Length: 379)
Name: NF6856_high_10
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_high_10 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 106 - 361
Target Start/End: Original strand, 27434022 - 27434277
Alignment:
| Q |
106 |
acttttcatgaattcaccttagttgctaactatacttcttgaacttcatcaacaggttgttagggaatgtggatcatttagtagctatatatggagtttt |
205 |
Q |
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| T |
27434022 |
acttttcatgaatttaccttcgttgctaactatacttcttgatcttcatcaacaggttgttagggaatgtggatcatttagtagctatatatggagtttt |
27434121 |
T |
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| Q |
206 |
gtaaatcataaaccaataattaacaaatacaaatacccaagaaatgtcccattaaggagtccaaaagcagaagctctaagcaaggacatggtaaaacgtg |
305 |
Q |
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| T |
27434122 |
gtaaatcataaaccaataattaacaaatacaaatacccaagaaatgtcccattaaggagtccaaaagcagaagctctaagcaaggacatggttaaacgtg |
27434221 |
T |
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| Q |
306 |
gatttcggtttgtgggaccagtgatagtgcactcttttatgcaagctgcaggattg |
361 |
Q |
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| T |
27434222 |
gatttcggtttgtgggaccagtgatagtgcactcttttatgcaagctgcaggattg |
27434277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27433497 - 27433581
Alignment:
| Q |
1 |
gcactttctttagctgatagcagagttatgtgcattgttgacaatgccaaatgcataatgaaggaaagtacatagtccatatcaa |
85 |
Q |
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| T |
27433497 |
gcactttctttagctgatagcagagttatgtgcattgttgacaatgccaaatgcataatgaaggaaagtacatagtccatatcaa |
27433581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 361
Target Start/End: Complemental strand, 102328 - 102134
Alignment:
| Q |
167 |
agggaatgtggatcatttagtagctatatatggagttttgtaaatcataaaccaataattaacaaatacaaatacccaagaaatgtcccattaaggagtc |
266 |
Q |
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| T |
102328 |
agggaatttggatcattcagtagctatatatggagttacgtgaatcacaaaccagtgattaacaaatacagatactcaagagatgttccattgaggacac |
102229 |
T |
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| Q |
267 |
caaaagcagaagctctaagcaaggacatggtaaaacgtggatttcggtttgtgggaccagtgatagtgcactcttttatgcaagctgcaggattg |
361 |
Q |
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| T |
102228 |
caaaagcagatgccataagcaaggacttattaaaacgcgggtttagatatttgggtccagtgattgtttactcttttatgcaagttgcaggattg |
102134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 102552 - 102487
Alignment:
| Q |
9 |
tttagctgatagcagagttatgtgcattgttgacaatgccaaatgcataatgaaggaaagtacata |
74 |
Q |
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| T |
102552 |
tttagctgagtgcagagtaaagtgcatagtcgacaatgccaaatgcatgatgaaggtaagtacata |
102487 |
T |
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