View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_high_26 (Length: 239)
Name: NF6856_high_26
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_high_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 43619571 - 43619334
Alignment:
| Q |
2 |
atggtgtttgaaggtgatgatcaacaaagaagcaataaccaaaacatgggaaggattattcaaaaatcacgtttggttataccctctacaatttctgcta |
101 |
Q |
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| T |
43619571 |
atggtgtatgaaggtgatgatcaacaaggaagcaataaccaaaacatgggaaggattattcaaaaatcacgtttggttataccctctacaatttctgcta |
43619472 |
T |
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| Q |
102 |
attctactcgtaaagatcatgctggagttatggataaaataatcaacctagaccagtaagtccaagttactatgatttattcttttaattattgttttct |
201 |
Q |
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| T |
43619471 |
attctactcgtaaagatcatgctggagttatggataaaataattaacctagaccagtaagtccaagttactatgatttattcttttaattattgttttct |
43619372 |
T |
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| Q |
202 |
tcatcatatcaatgtatgcattaaggtttctttttatt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43619371 |
tcatcatatcaatgtatgcattaaggtttctttttatt |
43619334 |
T |
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