View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_high_6 (Length: 442)
Name: NF6856_high_6
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 31328520 - 31328094
Alignment:
| Q |
16 |
acatcattccaagtctttttggggatttagtagaagcaaaagtctcaattgtgatacaaagaagaatttgagtttttctttacctcctttgtatagaagt |
115 |
Q |
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| T |
31328520 |
acatcattccaagtctttttggggatttagtagaagcaaaagtctcaattgtgatacaaagaagaatttgagtttttctttacctcctttgtatagaagt |
31328421 |
T |
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| Q |
116 |
aactcaactggttcggcgnnnnnnntgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgtatcctatgc |
215 |
Q |
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| T |
31328420 |
aactcaactggttcggcgaaaaaaatgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgtatcctatgc |
31328321 |
T |
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| Q |
216 |
aaaaatctaattcaggtaagagttatggaggatcttatggaaatggtcattggattagtcctgttctaaatgtaccaactccttgtgtttcaaagggaag |
315 |
Q |
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| T |
31328320 |
aaaaatctaattcaggtaagagttatggaggatcttatggaaatggtcattggattagtcctgttctaaatgtaccaactccttgtgtttcaaagggaag |
31328221 |
T |
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| Q |
316 |
tgcaaatttctttaggtttggttcgtttttaagtattggaaaggttaagaagaataagaagtgattttgttcatatgtatcacaatcatatcataacata |
415 |
Q |
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| T |
31328220 |
tgcaaatttctttaggtttggttcgtttttaagtattggaaaggttaagaagaataagaagtgattttgttcatatgtatcacaatcatatcataacata |
31328121 |
T |
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| Q |
416 |
ttataatgtaatagtttcatctttctt |
442 |
Q |
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| T |
31328120 |
ttataatgtaatagtttcatctttctt |
31328094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 371
Target Start/End: Complemental strand, 43918240 - 43918139
Alignment:
| Q |
270 |
ttagtcctgttctaaatgtaccaactccttgtgtttcaaagggaagtgcaaatttctttaggtttggttcgtttttaagtattggaaaggttaagaagaa |
369 |
Q |
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||||||||||| | |||||||||||||||||| |||| || |||||| || ||| ||| |||| ||||| ||||| || |||| |||| ||||||||| |
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| T |
43918240 |
ttagtcctgttttgaatgtaccaactccttgtttttcgaaaggaagtttaagtttatttgggttcggttcatttttgcgtgttgggaaggctaagaagaa |
43918141 |
T |
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| Q |
370 |
ta |
371 |
Q |
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| T |
43918140 |
ta |
43918139 |
T |
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