View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_high_9 (Length: 379)
Name: NF6856_high_9
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 37601762 - 37601403
Alignment:
| Q |
1 |
caatgaacttgacagcatataactcgccactccatttttcccttataagctttgcaacaccaaagttacctgatccaatatctttaattatttcatatct |
100 |
Q |
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| T |
37601762 |
caatgaacttgacagcatataactcgccactccatttttcccttataagctttgcaacaccaaagttacctgatccaatatctttaattatttcatatct |
37601663 |
T |
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| Q |
101 |
ttccatggttaagcttgaactctatattgatatagctagcaacttagttagaacgggttccttcttgtatgtgaaagttgtaggtaattgattgaatgag |
200 |
Q |
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| T |
37601662 |
ttccatggttaagcttgaactctatattgatatagctagcaacttagttagaacgggttccttcttgtatgtgaaagttgtaggtaattgattgaatgag |
37601563 |
T |
|
| Q |
201 |
cttatttttctttgtttcttgttgtacttgtactagctgtttgcgtgcatctatctattttatggtttccaaattccaacgcgcaaaggtttgctgaaaa |
300 |
Q |
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| T |
37601562 |
cttatttttctttgtttcttgttgtacttgtactagctgtttgcgtgcatctatctattttatggtttccaaattccaacgcgcaaaggtttgctgaaaa |
37601463 |
T |
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| Q |
301 |
atatgattgggttttagatgccctttattgcaagttactactacaattactacaattggactt |
363 |
Q |
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| T |
37601462 |
atatgattgggttttagatgccctttattgcaagtta---ctacaattactacaattggactt |
37601403 |
T |
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