View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6856_low_10 (Length: 410)
Name: NF6856_low_10
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 196 - 394
Target Start/End: Complemental strand, 37137006 - 37136808
Alignment:
| Q |
196 |
attgcaagaaatacttctaccttccatcacaagatcatccaaaagtccactattttttccatcatgtgataatggtgcaacttcatagtaatcattaacc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37137006 |
attgcaagaaatacttctaccttccatcacaagatcgtccaaaagtccactattttttccatcatgtgataatggtgcaacttcatagtaatcattaacc |
37136907 |
T |
|
| Q |
296 |
atgcttgaatttcccataaaattaccatcaactccactagcataagatgaagcaggagtttcagaatcatacagagatcctgcattgaatccatgatgt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37136906 |
atgcttgaatttcccataaaattaccatcaacgccactagcataagatgaagcaggagttttagaatcatacagagatcctgcattgaatccatgatgt |
37136808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 37137122 - 37137007
Alignment:
| Q |
50 |
tgactctcatcaatgctcttcttcttcttcatggttgacaccaaaggaacaatgccttcttcatcttcatattcttcaccctccatatttttcctcttat |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
37137122 |
tgactctcatcaatgctcttcttcttcttcatggttgacaccaaaggaacaatgccttcttcatcttcgtattcttcaccctccatgtttttcctcttat |
37137023 |
T |
|
| Q |
150 |
gagatacatccccctt |
165 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37137022 |
gagatacatccccctt |
37137007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University