View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_11 (Length: 405)
Name: NF6856_low_11
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 392
Target Start/End: Complemental strand, 3376950 - 3376561
Alignment:
| Q |
3 |
aaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcctcacaaggtggtgttgtga |
102 |
Q |
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| T |
3376950 |
aaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcctcacaaggtggtgttgtga |
3376851 |
T |
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| Q |
103 |
ttgaattcttggcaatagattttggtaacttctcctcgatcatattagaccatgtcttcacctcattttcaacctcttctttgaaattctcactaacctt |
202 |
Q |
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| T |
3376850 |
ttgaattcttggcaatagattttggtaacttctcctcgatcatattagaccatgtcttcacctcattttcaacctcttctttgaaattctcactaacctt |
3376751 |
T |
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| Q |
203 |
accattggaaaacatgaaaccttttccaacctcgaatccgttttctgaggtattgtctgctttgagcaaagtcgaatatggaacaaaaccattgccttga |
302 |
Q |
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| T |
3376750 |
accattggaaaacatgaaaccttttccaacctcgaatccgttttctgaggtattgtttgctttgagcaaagtcgaatatggaacaaaaccattgccttga |
3376651 |
T |
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| Q |
303 |
ctatgagatacaagttccaaagaacctaatgttgttgatgtcaatgctacaacatgataactatctcctttattttgaggtggatgatgt |
392 |
Q |
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| T |
3376650 |
ctatgagatacaagttccaaagaacctaatgttgttgatgtcaatgctacaacatgataactatctcctttattttgaggtggatgatgt |
3376561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 2372458 - 2372397
Alignment:
| Q |
15 |
tgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgat |
76 |
Q |
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||||| || ||| |||||||||| |||||||||| |||||||||| ||||||||||||||| |
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| T |
2372458 |
tgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgat |
2372397 |
T |
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