View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_15 (Length: 371)
Name: NF6856_low_15
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 3 - 356
Target Start/End: Complemental strand, 39946048 - 39945685
Alignment:
| Q |
3 |
gtgttataatggtgcaagtatttctcatgtaggttactgatttcaatctcctgtatcaacttatgttatcaccttgttcgtggcctaaggttcttatcgt |
102 |
Q |
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| T |
39946048 |
gtgttataatggtgcaagtatttctcatgtaggttactgatttcaatctcctgtatcaacttattttatcaccttgttcgtggcctaaggttcttatcgt |
39945949 |
T |
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| Q |
103 |
tgaagagaagtaattaaagagagaaagtttagactttagagagaatttgaatagttatatcatgattctgagttttggttttcaatcactgaggcttggc |
202 |
Q |
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| T |
39945948 |
tgaagagaagtaa----agagagaaagtttagactttagagagaatctgaatagttatatcatgattctgagtttttgttttcaatcactgaggcttggc |
39945853 |
T |
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| Q |
203 |
ttatatacaaatcagagaagcttgtctctgattttactagtcttagcaaactattacagttggcacaacc--------------aaatcaggtgttgtag |
288 |
Q |
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| T |
39945852 |
ttatatacaaatcagagaagcttgtctctgattttactagtcttagcaaactattacagttggcacaaccaaatgctagagactaaatcaggtgttgtag |
39945753 |
T |
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| Q |
289 |
aaactagtttttagaaggtctggttgtaggcttgtagcaaggatgatgctagaaaatgctctcaaact |
356 |
Q |
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| T |
39945752 |
aaactagtttttagaaggtctggttgtaggcttgtagcaaggatgatgctagaaaatgctctcaaact |
39945685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 18970913 - 18971012
Alignment:
| Q |
181 |
ttttcaatcactgaggcttggcttatatacaaatcagagaagcttgtctctgattttactagtcttagcaaac----tattacagttggcacaaccaaat |
276 |
Q |
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| T |
18970913 |
ttttcaaccaccgaggtttggcttatatacagataagagaagcctgtctctgatttcactaatcttaacaaactatttattacagctggcacaaccaaat |
18971012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 36702951 - 36702915
Alignment:
| Q |
320 |
ttgtagcaaggatgatgctagaaaatgctctcaaact |
356 |
Q |
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| T |
36702951 |
ttgtagcaaggatgatggtggaaaatgctctcaaact |
36702915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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