View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_16 (Length: 371)
Name: NF6856_low_16
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 10528464 - 10528803
Alignment:
| Q |
15 |
tttattgggctagacattgttgaatgaactaaaccaatttactcaatagtttatatatacttttgcaaaatgtaagccaaaa----aggttttgttttgt |
110 |
Q |
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| T |
10528464 |
tttattggactaaacattgttgaatgaactaaaccaatttactcaagagtttatatatactattgcaaaatgtaagtctaaagattttgttttgttttgt |
10528563 |
T |
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| Q |
111 |
ttccctggcctagagtaaagcagaaattgaaaaagcataggaataagaaaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgc |
210 |
Q |
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| T |
10528564 |
ttccctggcctagagtaaagcagaaattgaaaaagcataggaataagaaaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgc |
10528663 |
T |
|
| Q |
211 |
aagagggaaagagaaacaaataccatagtaagacaagcgagttttgtgaatgagttcttcttctaacatcaccatgcatgtaccacccatcatcataatt |
310 |
Q |
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| T |
10528664 |
aagagggagagagaaacaaatactatagtaagacaagcgagttttgtgaatgagttcttcttctaacatcaccatgcatgtaccacccatcatcataatt |
10528763 |
T |
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| Q |
311 |
tcttcttcctcttcttcttcgtcatcgcaagacaatggtg |
350 |
Q |
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| T |
10528764 |
tcttcttcttcttcttcttcgtcatcgcaagacaatggtg |
10528803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 10535355 - 10535650
Alignment:
| Q |
29 |
cattgttgaatgaactaaaccaatttactcaatagtttatatatacttttgcaaaatgtaagccaaaaaggttttgttttgtttccctggcctagagtaa |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
10535355 |
cattgttgaatgaactaaaccaatttactcaatagtttatatatacttttgcaaaatgtaagccaaaaaggttttgttttgtttccctggcctaggggaa |
10535454 |
T |
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| Q |
129 |
a-gcagaaattgaaaaagcataggaataagaaaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgcaagagggaaagagaaac |
227 |
Q |
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| T |
10535455 |
aagcagaaattgaaaaggcataggattaagaaaagccatgattcaagctcaaagggaaggtggaaacaaaaaagtgaagtagcaagagggagataaaaac |
10535554 |
T |
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| Q |
228 |
aaataccatagtaagacaagcgagttttgtgaatgagttcttcttctaacatcaccatgcatgtaccacccatcatcataatttcttcttcctctt |
323 |
Q |
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| T |
10535555 |
aaataccagagtaagacaagcgagatttgtgaatgagttcttcttctgacatcaccatgcatgcaccacccatcatcataatttcttcttcttctt |
10535650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 34370725 - 34370398
Alignment:
| Q |
3 |
ctgaattatggttttattgggctagacattgttgaatgaactaaaccaatttactcaatagtttatatatacttttgcaaaatgtaagccaaaaag---- |
98 |
Q |
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||||||| ||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||| | |
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| T |
34370725 |
ctgaattttggctttcttgggctaaacattgtctaatgaactaaaccaatttactcaatagtttatacaaattattgcaaaatgtaagccaaaaggtttt |
34370626 |
T |
|
| Q |
99 |
gttttgttttgtttccctggcctagagtaaa-gcagaaattgaaaaagcataggaataagaaaagccatgattcaagctcaaagggaagatggaaacaaa |
197 |
Q |
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||||||||||||||||||||||||| | ||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34370625 |
gttttgttttgtttccctggcctaggggaaaagcagaaactgaaaaagcatagggataagaaaagccatatttcaagctcaaagggaagatggaaacaaa |
34370526 |
T |
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| Q |
198 |
aaa-gtgaaatcgcaagagggaaagagaaacaaataccatagtaagacaagcgagttttgtgaatgagttcttcttctaacatcaccatgcatgtaccac |
296 |
Q |
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||| ||||| | |||||||||| ||| |||||||||||| || |||||||||||| |||||||||||||||||||||| |||||||| | |||| | ||| |
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| T |
34370525 |
aaaagtgaagtagcaagagggagagaaaaacaaataccagagcaagacaagcgagatttgtgaatgagttcttcttctgacatcaccgtacatgcagcac |
34370426 |
T |
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| Q |
297 |
ccatcatcataatttcttcttcctcttc |
324 |
Q |
| |
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|||||||||||||| |||||| ||||| |
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| T |
34370425 |
ccatcatcataattctttcttcttcttc |
34370398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 24467765 - 24467529
Alignment:
| Q |
4 |
tgaattatggttttattgggctagacattgttgaatgaactaaaccaatttactcaatagtttatatatacttttgcaaaatgtaagccaaaaag----g |
99 |
Q |
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|||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| |||||| | | |
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| T |
24467765 |
tgaattatggctttattgggctaaacattgttgaatgaaataaaccaatttacgcaatagtttatatatactattgcaaaatgtaatccaaaatgttttg |
24467666 |
T |
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| Q |
100 |
ttttgttttgtttccctggccta-gagtaaagcagaaattgaaaaagcataggaataagaaaagccatgattcaagctcaaagggaagatggaaacaaaa |
198 |
Q |
| |
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||||| ||| |||| ||| ||| | | |||| |||||||||| |||||| | ||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
24467665 |
ttttggtttttttcggtgggctaggggaaaagaagaaattgaagaagcatggaaataaaaaaagccatgattcaagctcaaagggaagatggaaataaaa |
24467566 |
T |
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| Q |
199 |
aagtgaaatcgcaagagggaaagagaaacaaatacca |
235 |
Q |
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||||||| | |||||||||| ||| |||||||||||| |
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| T |
24467565 |
aagtgaagtagcaagagggagagaaaaacaaatacca |
24467529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 24472060 - 24471829
Alignment:
| Q |
4 |
tgaattatggttttattgggctagacattgttgaatgaactaaaccaatttactcaatagtttatatatacttttgcaaaatgtaagccaaaaaggtttt |
103 |
Q |
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|||||||||| ||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||||| |||||| |
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| T |
24472060 |
tgaattatggctttattgggataaacattgttgaatgaaataaaccaatttacgcaatagtttatatatactattgcaaaatg--agccaaaa-ggtttt |
24471964 |
T |
|
| Q |
104 |
gttttg-----tttccctggcctagagtaaa-gcagaaattgaaaaagcataggaataagaaaagccatgattcaagctcaaagggaagatggaaacaaa |
197 |
Q |
| |
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|||||| ||| |||||||| | ||| | |||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24471963 |
gttttggtttttttgggtggcctaggggaaaagaagaaattgaagaagcatggaaataagaaaagccatgattcaagctcaaagggaagatggaaacaaa |
24471864 |
T |
|
| Q |
198 |
aaagtgaaatcgcaagagggaaagagaaacaaata |
232 |
Q |
| |
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|||||||| | ||||||||| ||| ||||||||| |
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| T |
24471863 |
aaagtgaagtaacaagagggagagaaaaacaaata |
24471829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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