View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_19 (Length: 296)
Name: NF6856_low_19
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 1832407 - 1832130
Alignment:
| Q |
1 |
taaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggtaaagaaatcatagatgaaataagaaga |
100 |
Q |
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| T |
1832407 |
taaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggtaaagaaatcatagatgaaataagaaga |
1832308 |
T |
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| Q |
101 |
aatttatctattttccattggttccaatcacgaggctaaataatgttcataaaaactaatgcatacacatagcaagatagctagatcaaccacacatggc |
200 |
Q |
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| T |
1832307 |
aatttatctattttccattggttccaatcacgaggctaaataatgttcataaaaactaatgcatacacatagcaagatagctagatcaaccacacatggc |
1832208 |
T |
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| Q |
201 |
gcatctaacaactaattgatagaatatttcaacctcttctagaataaaccaattaagaacattaatcattattctcct |
278 |
Q |
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| T |
1832207 |
gcatctaacaactaattgatagaatatttcaacctcttctagaataaaccaattaagaacattaatcattattctcct |
1832130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 1866850 - 1866573
Alignment:
| Q |
1 |
taaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggtaaagaaatcatagatgaaataagaaga |
100 |
Q |
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| T |
1866850 |
taaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggtaaagaaatcatagatgaaataagaaga |
1866751 |
T |
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| Q |
101 |
aatttatctattttccattggttccaatcacgaggctaaataatgttcataaaaactaatgcatacacatagcaagatagctagatcaaccacacatggc |
200 |
Q |
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| T |
1866750 |
aatttatctattttccattggttccaatcacgaggctaaataatgttcataaaaactaatgcatacacatagcaagatagctagatcaaccacacatggc |
1866651 |
T |
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| Q |
201 |
gcatctaacaactaattgatagaatatttcaacctcttctagaataaaccaattaagaacattaatcattattctcct |
278 |
Q |
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| T |
1866650 |
gcatctaacaactaattgatagaatatttcaacctcttctagaataaaccaattaagaacattaatcattattctcct |
1866573 |
T |
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