View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_20 (Length: 280)
Name: NF6856_low_20
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 278
Target Start/End: Complemental strand, 35043249 - 35042994
Alignment:
| Q |
23 |
gtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatcc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043249 |
gtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacaggagaagacatgaactcaaatgagtcaggcatcacaagggagcatcc |
35043150 |
T |
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| Q |
123 |
attattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctct |
222 |
Q |
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|||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35043149 |
attatttaaacattaaacagaattcagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatccgaaacctct |
35043050 |
T |
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| Q |
223 |
tcattactttgataattttgtgatatgtacattccaaggttgatgtccatctcatt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35043049 |
tcattactttgataattttgtgatatgtacattccaaggttgatagccatctcatt |
35042994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 51855232 - 51855487
Alignment:
| Q |
23 |
gtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatcc |
122 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855232 |
gtttcaaatacttatccaaaattgttcttgagctgcaagttaagataaaaacaaaagaagacatgaactcaaatgagtcaggcatcacaagggagcatcc |
51855331 |
T |
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| Q |
123 |
attattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctct |
222 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855332 |
attatttaaacattaaacagaattaagtttgtccaataacttgctagatctgatctctgccagccacttcccaatcaagcgatatacatctgaaacctct |
51855431 |
T |
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| Q |
223 |
tcattactttgataattttgtgatatgtacattccaaggttgatgtccatctcatt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51855432 |
tcattactttgataattttgtgatatgtacattccaaggttgatagccatctcatt |
51855487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 8944467 - 8944678
Alignment:
| Q |
23 |
gtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatcc |
122 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8944467 |
gtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaggggagcatcc |
8944566 |
T |
|
| Q |
123 |
attattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctct |
222 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944567 |
attatttaaacattaaacagaattaagtttgtccaataacttgctacatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctct |
8944666 |
T |
|
| Q |
223 |
tcattactttga |
234 |
Q |
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|||||||||||| |
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| T |
8944667 |
tcattactttga |
8944678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 1869515 - 1869574
Alignment:
| Q |
209 |
catctgaaacctcttcattactttgata--attttgtgatatgtacattccaaggttgat |
266 |
Q |
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|||||||| |||||||||||||||||| |||| ||||||||||||| | ||||||||| |
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| T |
1869515 |
catctgaagtctcttcattactttgataatatttggtgatatgtacatcctaaggttgat |
1869574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 26887192 - 26887003
Alignment:
| Q |
23 |
gtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatcc |
122 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887192 |
gtttcaaatacttttccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatcc |
26887093 |
T |
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| Q |
123 |
attattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatc |
212 |
Q |
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|||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26887092 |
attatttaaacattaaacagaattaagtttgtccaataacttgctagatctggtctctgccggccacttcccaatcaagcgatatacatc |
26887003 |
T |
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