View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_22 (Length: 263)
Name: NF6856_low_22
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 46795574 - 46795351
Alignment:
| Q |
16 |
tttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaaga |
115 |
Q |
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| T |
46795574 |
tttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaaga |
46795475 |
T |
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| Q |
116 |
ttcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaagatatgttagagtttgacaaacc |
215 |
Q |
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| T |
46795474 |
ttcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaagatatgttagagtttgacaaacc |
46795375 |
T |
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| Q |
216 |
aagtaacacacttgagtggctttt |
239 |
Q |
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| T |
46795374 |
aagtaacacacttgagtggctttt |
46795351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 6032037 - 6032179
Alignment:
| Q |
94 |
aagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaag |
193 |
Q |
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| T |
6032037 |
aagaaagacaggcatagcaagattcacacatctcaagggttgagagacagaagggtgagactttccatcgagatcgcgaggaagttcttcgatcttcaag |
6032136 |
T |
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| Q |
194 |
atatgttagagtttgacaaaccaagtaacacacttgagtggct |
236 |
Q |
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| T |
6032137 |
acatgttagggtttgacaaagcaagcaacacacttgaatggct |
6032179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 6711250 - 6711316
Alignment:
| Q |
173 |
gaaagttctttgatcttcaagatatgttagagtttgacaaaccaagtaacacacttgagtggctttt |
239 |
Q |
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| T |
6711250 |
gaaagttcttcgatcttcaagacatgttagggtttgacaaagctagcaacacacttgattggctttt |
6711316 |
T |
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