View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_24 (Length: 260)
Name: NF6856_low_24
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 31327787 - 31328031
Alignment:
| Q |
3 |
ggacatcagacacaatcctgacacgtcaacaccgataaaa-ttttnnnnnnntgacgtaatttaatgcaatcacaagtgtcgt-----gtcagcgtcgga |
96 |
Q |
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| T |
31327787 |
ggacatcagacacaatactgacacgtcaacatcaataaaaattttaagaaaattacataatttaatgcaatcacaagtgtcgtatcgtgtcagcgtcgga |
31327886 |
T |
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| Q |
97 |
cactgaaacacacattcaatcagaagtgttggtgtaacagagattatgctattaacacttagttaaattgtttatccaaaccgagcctattactatgcta |
196 |
Q |
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| T |
31327887 |
cagtggaacacacattcaatcagaagtgttggtgtaacagagattatgctattaacacttagttaaattgtttatccaaactgagcctattactatgcta |
31327986 |
T |
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| Q |
197 |
accaaacctctatgacacaataacaagccaagatgaatacatgaaa |
242 |
Q |
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| T |
31327987 |
a-ctaacctctatgacataataacaagccaagatgaatacatgaaa |
31328031 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 13484072 - 13484127
Alignment:
| Q |
83 |
gtgtcagcgtcggacactgaaacacacattcaatcagaagtgttggtgtaacagag |
138 |
Q |
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| T |
13484072 |
gtgtcagtgtcggacactggaacatgcattcaatcagaagtgttggtgcaacagag |
13484127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 17125776 - 17125818
Alignment:
| Q |
135 |
agagattatgctattaacacttagttaaattgtttatccaaac |
177 |
Q |
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| T |
17125776 |
agagattatgctattagcacttaataaaattgtttatccaaac |
17125818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 8422986 - 8423030
Alignment:
| Q |
138 |
gattatgctattaacacttagttaaattgtttatccaaaccgagc |
182 |
Q |
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| T |
8422986 |
gattatgctataaacacttaattaagttgtttatccaaactgagc |
8423030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 26915307 - 26915230
Alignment:
| Q |
22 |
gacacgtcaacaccgataaaattttnnnnnnntgacgtaatttaatgcaatcacaagtgtcgtgtcagcgtcggacac |
99 |
Q |
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| T |
26915307 |
gacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggacac |
26915230 |
T |
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