View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_25 (Length: 253)
Name: NF6856_low_25
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 434598 - 434839
Alignment:
| Q |
1 |
caattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataat |
100 |
Q |
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| T |
434598 |
caattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataat |
434697 |
T |
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| Q |
101 |
cttagatgaatcgaatttaattctaacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaa |
200 |
Q |
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| T |
434698 |
cttagatgaatcgaatttaattctcacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgaaaatctgggcgacatccatgaaattggaa |
434797 |
T |
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| Q |
201 |
gacaacgaaaa-ccctaatcttaaaatgagatccatgatgtcc |
242 |
Q |
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| T |
434798 |
gacgacgaaaatccctaatctt-aaatgagatccatgatgtcc |
434839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 17512754 - 17512681
Alignment:
| Q |
128 |
aaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaag |
201 |
Q |
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| T |
17512754 |
aaaaacaataactaactgaaacaaacgcgaaaaactacatttgaaaatctaggcgacatccatgaaattggaag |
17512681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 17512893 - 17512780
Alignment:
| Q |
9 |
ttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatg |
108 |
Q |
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| T |
17512893 |
ttgaatcccttggcttcaataagttaaaatcaattgagactcaatgacaaaggtacaactaatcgtagaatttatgaatttgaagccctaatcttaaatg |
17512794 |
T |
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| Q |
109 |
aatcgaatttaatt |
122 |
Q |
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| T |
17512793 |
aattgaattcaatt |
17512780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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