View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_27 (Length: 250)
Name: NF6856_low_27
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 26765529 - 26765308
Alignment:
| Q |
18 |
caataaccacctacagaaggatgtgacaatactctcaattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagtct |
117 |
Q |
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| T |
26765529 |
caataaccacctatagaaggatgtgacaataccgtcaattggtcacaccatggcacaacaaaccccattttcccacacatatgtttcaatctatgagtct |
26765430 |
T |
|
| Q |
118 |
cgtctcgtgttacccacaagaatcgaacaccactatcatgcaatgcagatgcaatttcatccatttgtgttcttgaaacggatagataacttccatatga |
217 |
Q |
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|||| || |||||||||||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26765429 |
cgtcacgcgttacccacaagaaccgaacaccactatcgtgcaatgcagctgcaatatcatccatttgtgttcttgaaaccgatagataacttccatatga |
26765330 |
T |
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| Q |
218 |
aatgtacaaaacagaaccatta |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
26765329 |
aatgtacaaaacagaaccatta |
26765308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 26785631 - 26785412
Alignment:
| Q |
18 |
caataaccacctacagaaggatgtgacaatactctcaattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagtct |
117 |
Q |
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||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785631 |
caataaccacctatagaaggatgtaacaataccctcaattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagtct |
26785532 |
T |
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| Q |
118 |
cgtctcgtgttacccacaagaatcgaacaccactatcatgcaatgcagatgcaatttcatccatttgtgttcttgaaacggatagataacttccatatga |
217 |
Q |
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| T |
26785531 |
cgtcgcgcgctacccacaagaaccgaacaccactatcctgcaatgcagctgcaatttcatccatttgtgttcttgaaaccgatagataactgccatatga |
26785432 |
T |
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| Q |
218 |
aatgtacaaaacagaaccat |
237 |
Q |
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| T |
26785431 |
aatgtacaaaacggaaccat |
26785412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 32075134 - 32075170
Alignment:
| Q |
32 |
agaaggatgtgacaatactctcaattggtcacaccat |
68 |
Q |
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| T |
32075134 |
agaaggatgtgacaaaactctcaattggtcacaccat |
32075170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 31010517 - 31010461
Alignment:
| Q |
48 |
actctcaattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttc |
104 |
Q |
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|||||||||||||||||||||| || ||||||||| ||| |||||| |||| |||| |
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| T |
31010517 |
actctcaattggtcacaccatggcaaaacaaaccctttttccccacaaatatctttc |
31010461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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