View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_29 (Length: 246)
Name: NF6856_low_29
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 41214100 - 41214324
Alignment:
| Q |
1 |
ctagacctactctcgtcaagctatcgaccagatacgtcataaagaatccaatcattgcagtgcgagctgcatgatatcaagaagtaaaagtaaataaagt |
100 |
Q |
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| T |
41214100 |
ctagacctactcccgtcaagctatcgaccagatacgtcataaagaatccaatcattgcagcgcgagctgcatgatatcaagaagtaaaagtaaataaagt |
41214199 |
T |
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| Q |
101 |
tgatttttgtactcttattgaaagaagaaaaaactttgttctcatttcattttagaatacaaaacgaccatcaagtagttcagcttcagggagatggaaa |
200 |
Q |
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| T |
41214200 |
tgatttttgtactcttactgaaagaagaaaaaa---aattctcatttcattttagaatacaaaacgaccatcaagtagttcagcttcagggagatggaac |
41214296 |
T |
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| Q |
201 |
cttttaatacataattgtaattgctggt |
228 |
Q |
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| T |
41214297 |
cttttaatacataattgtcattgctggt |
41214324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 41216505 - 41216715
Alignment:
| Q |
3 |
agacctactctcgtcaagctatcgaccagatacgtcataaagaatccaatcattgcagtgcgagctgcatgata-tcaagaagtaaaagtaaataaagtt |
101 |
Q |
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| T |
41216505 |
agacctactcctgtcaagctatcaaccagatatgtcataaagaatcctatcattgcggcgcgacctgcatgatacccaagaagaaaaagttaacagagtt |
41216604 |
T |
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| Q |
102 |
gatttttgtactcttattgaaagaagaaaaaactt--tgttctcatttcattttagaatacaaaac------gaccatcaagtagttcagcttcagggag |
193 |
Q |
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| T |
41216605 |
gattttttccctcttatcaaaa----aacaacctttattttctcgtttcattttagaatacaaaacaaaactgaccattaagtagttcagcttcagggag |
41216700 |
T |
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| Q |
194 |
atggaaacttttaat |
208 |
Q |
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| T |
41216701 |
atggaaccttttaat |
41216715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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