View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_3 (Length: 610)
Name: NF6856_low_3
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 10 - 599
Target Start/End: Complemental strand, 21078597 - 21077996
Alignment:
| Q |
10 |
catcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgcttttt |
109 |
Q |
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| T |
21078597 |
catcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgtttttt |
21078498 |
T |
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| Q |
110 |
ctttttatgggaacttggaggaaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgc |
209 |
Q |
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| T |
21078497 |
ctttttatgggaacttggaggcaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgc |
21078398 |
T |
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| Q |
210 |
tccaagaaggagacagggaagaaggatgtggttggagactcaatacccttttcgcggtgcgatctcatgttggaaggaaaaaccttatcatggtcaagaa |
309 |
Q |
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| T |
21078397 |
tccaagaaggagacagggaagaaggatgtggtcggagactcaatacccttttcgcagtgcgatctcatgttggacggaaaaaccttatcatagtcaagaa |
21078298 |
T |
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| Q |
310 |
aagcatgcttctgcttcctatgatcatcaagaacatcatgtttatgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgattt |
409 |
Q |
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| T |
21078297 |
atgcatgcttctgcttcctatgatcatcaagaacatcatgtttctgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgattt |
21078198 |
T |
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| Q |
410 |
gtggccaccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattaaacaaccaatattctttttctgctcatc- |
508 |
Q |
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| T |
21078197 |
gtggccgccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattgaacaaccaatattctttttctgatcatca |
21078098 |
T |
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| Q |
509 |
-----------gtgatcatattctttcttttgttgttgttgtttatggttgtcgtaacaagaacgatgagaaaaatgtttcttcatgatcgtgatgatga |
597 |
Q |
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| T |
21078097 |
gtagcatcatggtgatcatattctttcttttgatgttgttgtttatggttgtcgtaacaagaacgaagagaaaaatgtttcttcatgatcgtgatgatga |
21077998 |
T |
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| Q |
598 |
tg |
599 |
Q |
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| T |
21077997 |
tg |
21077996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 3073724 - 3073780
Alignment:
| Q |
32 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
88 |
Q |
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| T |
3073724 |
agacatatcgaagagtgtatatgctccattaagatgttcatgatcaatgatatttct |
3073780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 27732088 - 27732144
Alignment:
| Q |
32 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
88 |
Q |
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| T |
27732088 |
agacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatatttct |
27732144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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