View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6856_low_35 (Length: 228)
Name: NF6856_low_35
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6856_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47291404 - 47291619
Alignment:
| Q |
1 |
cttataatcctacataattatacaacgcagaaacacttgagattctacaatggatttattaacagaaagagtagaatcagaaactttgagcaatttcaac |
100 |
Q |
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| T |
47291404 |
cttataatcctacataattatacaacaca-aaacactt------ctacaatggatttatcaacagaaagagtagaatcagaaactttgagcaatttcaac |
47291496 |
T |
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| Q |
101 |
gtcatattccatatatatagaggacactttgagcaatttcaggatcaggatcgaggaccatgaaaaatcagagtttattatcatttgataccatgtagat |
200 |
Q |
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| T |
47291497 |
gtcatattccatatatatagaggacactttgagcaatttcaggatcaggaccgaggaccatgaaaaatcagagtttattatcatttgataccatgtagat |
47291596 |
T |
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| Q |
201 |
ttacgaaaattaaccaaaaaagt |
223 |
Q |
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| T |
47291597 |
ttacgaaaattaaccaaaaaagt |
47291619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 47298053 - 47298191
Alignment:
| Q |
9 |
cctacataattatacaacgcagaaacacttg-agattctacaatggatttattaacagaaagagtagaatcagaaactttgagcaa--tttcaacgtcat |
105 |
Q |
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||||||||||||||||| ||||||||||| | ||||||||||| ||| ||||||||| |||||||||||||||||||||||||| | ||||| | |||| |
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| T |
47298053 |
cctacataattatacaaagcagaaacactaggagattctacaagggacttattaacataaagagtagaatcagaaactttgagcgatttttcagcttcat |
47298152 |
T |
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| Q |
106 |
attccatatatatagaggacactttgagcaatttcaggatc |
146 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |
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| T |
47298153 |
attctatatatatagaggacac--tgagcaatttcaggatc |
47298191 |
T |
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