View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6856_low_8 (Length: 441)

Name: NF6856_low_8
Description: NF6856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6856_low_8
NF6856_low_8
[»] scaffold0150 (1 HSPs)
scaffold0150 (18-425)||(13963-14372)
[»] chr2 (8 HSPs)
chr2 (64-376)||(7867170-7867489)
chr2 (224-352)||(8145410-8145541)
chr2 (323-376)||(23876058-23876111)
chr2 (329-376)||(7868142-7868189)
chr2 (323-376)||(6085696-6085749)
chr2 (322-378)||(44094811-44094867)
chr2 (329-376)||(36390957-36391004)
chr2 (24-53)||(7867487-7867516)
[»] chr7 (11 HSPs)
chr7 (18-138)||(9123267-9123389)
chr7 (307-376)||(29060718-29060787)
chr7 (322-376)||(40320404-40320458)
chr7 (323-376)||(36844612-36844665)
chr7 (332-376)||(9122650-9122694)
chr7 (329-369)||(24996684-24996724)
chr7 (329-376)||(24995852-24995899)
chr7 (322-377)||(32871134-32871189)
chr7 (329-376)||(42607081-42607128)
chr7 (334-376)||(6730163-6730205)
chr7 (340-376)||(42607824-42607860)
[»] chr3 (11 HSPs)
chr3 (323-376)||(49160987-49161040)
chr3 (307-376)||(33455760-33455829)
chr3 (320-378)||(43768024-43768082)
chr3 (297-378)||(45298328-45298407)
chr3 (306-369)||(31598772-31598835)
chr3 (335-377)||(8653727-8653769)
chr3 (334-376)||(44022093-44022135)
chr3 (323-369)||(49161803-49161849)
chr3 (307-376)||(33454866-33454935)
chr3 (330-370)||(26836352-26836392)
chr3 (322-377)||(33968180-33968236)
[»] scaffold2003 (1 HSPs)
scaffold2003 (329-376)||(532-579)
[»] chr5 (7 HSPs)
chr5 (289-376)||(9923388-9923475)
chr5 (329-376)||(6804891-6804938)
chr5 (329-375)||(4789521-4789567)
chr5 (323-377)||(1970509-1970563)
chr5 (251-313)||(43588356-43588418)
chr5 (329-369)||(26712389-26712429)
chr5 (329-369)||(26982127-26982167)
[»] chr8 (6 HSPs)
chr8 (300-376)||(35840502-35840578)
chr8 (289-376)||(7054090-7054177)
chr8 (289-377)||(42345393-42345481)
chr8 (289-376)||(42346066-42346153)
chr8 (334-376)||(35943076-35943118)
chr8 (324-376)||(35943835-35943887)
[»] chr6 (2 HSPs)
chr6 (330-378)||(8384020-8384068)
chr6 (329-376)||(29290123-29290170)
[»] chr4 (14 HSPs)
chr4 (329-377)||(25970105-25970153)
chr4 (329-378)||(36450726-36450775)
chr4 (329-376)||(38009284-38009331)
chr4 (289-376)||(39429898-39429985)
chr4 (329-376)||(45330565-45330612)
chr4 (329-375)||(36451428-36451474)
chr4 (335-376)||(22062233-22062274)
chr4 (260-349)||(31911400-31911489)
chr4 (260-349)||(32450150-32450239)
chr4 (306-367)||(47326767-47326828)
chr4 (306-367)||(47341563-47341624)
chr4 (329-377)||(232050-232098)
chr4 (329-381)||(30808616-30808668)
chr4 (289-377)||(39429224-39429312)
[»] chr1 (7 HSPs)
chr1 (306-376)||(34716424-34716494)
chr1 (329-376)||(47334199-47334246)
chr1 (329-376)||(50950145-50950192)
chr1 (329-378)||(4640526-4640575)
chr1 (322-378)||(6766972-6767028)
chr1 (329-369)||(30466189-30466229)
chr1 (336-376)||(41884237-41884277)
[»] scaffold0129 (1 HSPs)
scaffold0129 (329-377)||(43219-43267)


Alignment Details
Target: scaffold0150 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 14372 - 13963
Alignment:
Q  18 gtttgtttttcttgaacatgtttaaggtggccggaagtggtgaccagaaaggaggaggaagctgaaaagggagaaatccaagaccatggagaga--aaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  14372 gtttgtttttcttgaacatgtttaaggtggccggaagtggtgaccggaaaggaggaggaagctgaaaagggagaaatccaagaccatggagagagaaaac 14273  T
Q  116 atgaggcaggaaaggggtaattgatgactgnnnnnnnctttctcttttgtcaccaatttttagatgctacaacagaggagaggggaattgcaggaatgat 215  Q
    ||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14272 atgaggcaggaaaggggtaattgatgactgattttttttctctcttttgtcaccaatttttagatgctacaacagaggagaggggaattgcaggaatgat 14173  T
Q  216 atatgttcaagacaatggaggttgaagatgaatattaaagagaaagaaaaaatatagtgtgaacagaccaagctaaaatcaatacacctgtttaatctga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  14172 atatgttcaagacaatggaggttgaagatgaatattaaagagaaagaaaaaatatagtgtggacagaccaagctaaaatcaatacatctgtttaatctga 14073  T
Q  316 ccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccaccatggtagctcgttttggaggtaaacattttcttgcccga 415  Q
    ||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14072 ccgtttataaaacattttccatggtgggaaacaactcccctttcccatgctaaatcccaccatggtaactcgttttggaggtaaacattttcttgcccga 13973  T
Q  416 taattgatgt 425  Q
    ||| ||||||    
T  13972 taaatgatgt 13963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 64 - 376
Target Start/End: Complemental strand, 7867489 - 7867170
Alignment:
Q  64 gaaaggaggaggaagctgaaaagggagaaatccaagaccatggagaga--aaacatgaggcaggaaaggggtaattgatgactgnnnnnnnctt-----t 156  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||        ||     |    
T  7867489 gaaaggaggaggaagctgaaaaaggagaaatccaagaccatggagagagaaaacatgagccaggaaaggggtaattgatgactgttttttttttcttctt 7867390  T
Q  157 ctcttttgtcaccaatttttagatgctacaacagaggagaggggaattgcaggaatgatatatgttcaagacaatggaggttgaagatgaatattaaaga 256  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  7867389 ctcttttgtcatcaatttttagatgctacaacagaggagaggggaattgcaggaatgatatatgttcaaaacaatggaggttgaagatcaatattaaaga 7867290  T
Q  257 gaaagaaaaaatatagtgtgaacagaccaagctaaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactcccct 356  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| |||||||||    
T  7867289 gaaagaaaaaatatagtgtggacagaccaagctaaaatcaatacacctgtttaatctgaccatttaaaaaatctttcccatggtagaaaataactcccct 7867190  T
Q  357 tttccatgctaaatcccacc 376  Q
    |||||||||||||| |||||    
T  7867189 tttccatgctaaattccacc 7867170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 8145541 - 8145410
Alignment:
Q  224 aagacaatggaggttgaagatgaatattaaagagaaag---aaaaaatatagtgtgaacagaccaagctaaaatcaatacacctgtttaatctgaccgtt 320  Q
    ||||||||||||||||||| | ||| |||||| | ||    ||||||| | |||||||||||||| |||||||||||||  | | |||||||  || ||     
T  8145541 aagacaatggaggttgaaggtcaatgttaaaggggaatgaaaaaaaatcttgtgtgaacagaccatgctaaaatcaataatcatctttaatccaacagtc 8145442  T
Q  321 taaaaaatcttttccatggtgggaaacaactc 352  Q
     ||||||||||| |||||||||||||||||||    
T  8145441 caaaaaatctttcccatggtgggaaacaactc 8145410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 23876058 - 23876111
Alignment:
Q  323 aaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||    
T  23876058 aaaaatctttcccatggtgggaaacaactcccatttcccatgctaaaccccacc 23876111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 7868142 - 7868189
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||    
T  7868142 ctttcccatggtgggaaacaactcccctttctcatgctaaatcccacc 7868189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 6085696 - 6085749
Alignment:
Q  323 aaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||| ||||||| ||||||||||| ||||| |||||||||| ||||||    
T  6085696 aaaaatctttcccatggtaggaaacaactcacctttcccatgctaaaccccacc 6085749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 44094811 - 44094867
Alignment:
Q  322 aaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccaccat 378  Q
    |||||| |||||  ||||||||||||||||  ||||| |||||||||||||||||||    
T  44094811 aaaaaaacttttttatggtgggaaacaactttcctttcccatgctaaatcccaccat 44094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 36391004 - 36390957
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||| |||||||||||||||||| |||||| |||||||||| ||||||    
T  36391004 ctttcccatggtgggaaacaacttccctttcccatgctaaaccccacc 36390957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 7867516 - 7867487
Alignment:
Q  24 ttttcttgaacatgtttaaggtggccggaa 53  Q
    ||||||||||||||||||||||||||||||    
T  7867516 ttttcttgaacatgtttaaggtggccggaa 7867487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 9123267 - 9123389
Alignment:
Q  18 gtttgtttttcttgaacatgtttaaggtggccggaagtggtgaccagaaaggaggaggaagctgaaaagggagaaatccaagaccatg--gagagaaaac 115  Q
    ||||||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||  ||||||||||    
T  9123267 gtttgtttttcttgaacatattcacggtggccggaagtggtgaccggaaaggaggaggaagctgaaaagggagaaatctgagaccatggagagagaaaac 9123366  T
Q  116 atgaggcaggaaaggggtaattg 138  Q
    ||||||||||||| ||| |||||    
T  9123367 atgaggcaggaaatgggaaattg 9123389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 29060718 - 29060787
Alignment:
Q  307 ttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||| |||||| |||||| |||| |||||||||||||||| |||||||| |||||||||| ||||||    
T  29060718 ttaatctaaccgttaaaaaaaactttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 29060787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 40320404 - 40320458
Alignment:
Q  322 aaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  40320404 aaaaaaacttttccatggtgggaaacaactctcctttcccatgctaaaccccacc 40320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 36844665 - 36844612
Alignment:
Q  323 aaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||||||  |||||||||||||||||| ||||| |||||||||| ||||||    
T  36844665 aaaaatctttctcatggtgggaaacaactcacctttcccatgctaaaccccacc 36844612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 9122694 - 9122650
Alignment:
Q  332 ttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||    
T  9122694 ttccatggtgggaaacaacttccctttcccatgctaaatgccacc 9122650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 24996684 - 24996724
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaa 369  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  24996684 ctttcccatggtgggaaacaactcccctttcccatgctaaa 24996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 24995899 - 24995852
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||| ||||||||||||||||||||||||| |||| ||||| ||||||    
T  24995899 ctttcccatggtgggaaacaactcccctttcccattctaaaccccacc 24995852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 32871134 - 32871189
Alignment:
Q  322 aaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    |||||| |||| | |||||||||||||||||||| || |||||||||| |||||||    
T  32871134 aaaaaaactttcctatggtgggaaacaactccccattcccatgctaaaccccacca 32871189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 42607128 - 42607081
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||| |||||||||||||||| |||||||| |||||||||| ||||||    
T  42607128 ctttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 6730163 - 6730205
Alignment:
Q  334 ccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||||||| |||||| |||||||||| ||||||    
T  6730163 ccatggtgggaaacaacttccctttcccatgctaaaccccacc 6730205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 42607824 - 42607860
Alignment:
Q  340 tgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  42607824 tgggaaacaattccccttttccatgctaaaccccacc 42607860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 49161040 - 49160987
Alignment:
Q  323 aaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  49161040 aaaaatcttttccatggtaggaaacaactcccctttcccatgctaaaccccacc 49160987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 33455760 - 33455829
Alignment:
Q  307 ttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||| |||||| |||||| |||| | |||||||||||||| |||||||| |||||||||| ||||||    
T  33455760 ttaatctaaccgttaaaaaaaactttcctatggtgggaaacaattcccctttcccatgctaaaccccacc 33455829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 43768082 - 43768024
Alignment:
Q  320 ttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccaccat 378  Q
    |||||||| |||| ||||||||||||||||||| || || ||||||||||| |||||||    
T  43768082 ttaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaatgccaccat 43768024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 45298328 - 45298407
Alignment:
Q  297 atacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccaccat 378  Q
    |||||||| ||||||||||  ||| ||||||  ||||||||||||||||||||||| || ||||||| ||||| ||||||||    
T  45298328 atacacctctttaatctgatggttgaaaaaag-ttttccatggtgggaaacaactctcc-tttccatactaaaccccaccat 45298407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 31598772 - 31598835
Alignment:
Q  306 tttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaa 369  Q
    |||||||| || ||| |||||| |||| ||||||||||||||||||   |||||||||||||||    
T  31598772 tttaatctaactgttcaaaaaaactttcccatggtgggaaacaacttttcttttccatgctaaa 31598835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 8653727 - 8653769
Alignment:
Q  335 catggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    |||||||||||||||  |||||||||||||||||| |||||||    
T  8653727 catggtgggaaacaatcccccttttccatgctaaaccccacca 8653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 44022093 - 44022135
Alignment:
Q  334 ccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||    
T  44022093 ccatggtggaaaacaactctccttttccatgctaaatgccacc 44022135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 49161803 - 49161849
Alignment:
Q  323 aaaaatcttttccatggtgggaaacaactccccttttccatgctaaa 369  Q
    ||||| |||| |||||||||||||||| |||||||| ||||||||||    
T  49161803 aaaaaactttcccatggtgggaaacaattcccctttcccatgctaaa 49161849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 33454935 - 33454866
Alignment:
Q  307 ttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||| |||||| |||||| ||||  ||||||||||||||| |  ||||| |||||||||| ||||||    
T  33454935 ttaatctaaccgttaaaaaaaactttctcatggtgggaaacaattttcctttcccatgctaaaccccacc 33454866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 26836392 - 26836352
Alignment:
Q  330 ttttccatggtgggaaacaactccccttttccatgctaaat 370  Q
    ||||||||| |||||||||| |||||||| |||||||||||    
T  26836392 ttttccatgatgggaaacaattcccctttcccatgctaaat 26836352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 33968236 - 33968180
Alignment:
Q  322 aaaaaatcttttcc-atggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    ||||||| |||||| |||||||||||||| | |||||| |||||||||| |||||||    
T  33968236 aaaaaatattttcccatggtgggaaacaagttccctttcccatgctaaaccccacca 33968180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 532 - 579
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  532 cttttccatggtgggaaacaactcccctttcccatgcttaatcccacc 579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 9923475 - 9923388
Alignment:
Q  289 taaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||| ||||| ||| |||||||| |  ||| |||||| |||||||||||||||||||||||| || || |||||||||| ||||||    
T  9923475 taaaattaatactcctctttaatctaatggttgaaaaaaacttttccatggtgggaaacaactctccattcccatgctaaaccccacc 9923388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 6804938 - 6804891
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  6804938 cttttccatggtgggaaacaactcctctttcccatgctaaaccccacc 6804891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 4789567 - 4789521
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccac 375  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  4789567 ctttcccatggtgggaaacaactcccctttcccatgctaaaccccac 4789521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 1970509 - 1970563
Alignment:
Q  323 aaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    ||||| |||| ||||||||||||||||||| || || ||||||||||| ||||||    
T  1970509 aaaaaactttcccatggtgggaaacaactctccattcccatgctaaatgccacca 1970563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 43588418 - 43588356
Alignment:
Q  251 taaagagaaagaaaaaatatagtgtgaacagaccaagctaaaatcaatacacctgtttaatct 313  Q
    ||||||||||||||||||||| | || |||||||| | ||| ||||||| |||| ||||||||    
T  43588418 taaagagaaagaaaaaatataatatggacagaccatgataagatcaatagacctctttaatct 43588356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 26712389 - 26712429
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaa 369  Q
    |||| |||||||||||||||||| |||||| ||||||||||    
T  26712389 ctttcccatggtgggaaacaacttccctttcccatgctaaa 26712429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 26982127 - 26982167
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaa 369  Q
    |||| |||||||||||||||||| |||||| ||||||||||    
T  26982127 ctttcccatggtgggaaacaacttccctttcccatgctaaa 26982167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 35840502 - 35840578
Alignment:
Q  300 cacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||| ||||||||||| ||  |||||| |||| |||| ||||||||||||| |||||| |||||||||| ||||||    
T  35840502 cacctctttaatctgacagtcaaaaaaaactttcccatcgtgggaaacaacttccctttcccatgctaaaccccacc 35840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 7054177 - 7054090
Alignment:
Q  289 taaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||| ||||| |||  ||||||| |  ||| |||||| |||||||||||||||||||||||| || || ||||||||||| |||||    
T  7054177 taaaattaatactcctccttaatctaatggttgaaaaaaacttttccatggtgggaaacaactctccattcccatgctaaatgccacc 7054090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 42345481 - 42345393
Alignment:
Q  289 taaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    |||||| ||||| |||  ||||||| |  ||| |||||| |||| ||||||||||||||||||| || || ||||||||||| ||||||    
T  42345481 taaaattaatactcctccttaatctaatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaatgccacca 42345393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 42346066 - 42346153
Alignment:
Q  289 taaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||| ||||| ||| |||||||| |  ||| |||||| |||| ||||| ||||||||||||| || || |||||||||| ||||||    
T  42346066 taaaattaatactcctctttaatctaatggttgaaaaaaactttcccatgatgggaaacaactctccattcccatgctaaaccccacc 42346153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 35943118 - 35943076
Alignment:
Q  334 ccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||||||| |||||| |||||||||| ||||||    
T  35943118 ccatggtgggaaacaacttccctttcccatgctaaaccccacc 35943076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 35943835 - 35943887
Alignment:
Q  324 aaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||| ||||||||| ||||||||||| || ||||| |||||||||| ||||||    
T  35943835 aaaaacttttccatagtgggaaacaattctcctttcccatgctaaaccccacc 35943887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 8384020 - 8384068
Alignment:
Q  330 ttttccatggtgggaaacaactccccttttccatgctaaatcccaccat 378  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||||    
T  8384020 ttttccatggtgggaaacaactccactttcccatgctaaaccccaccat 8384068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 29290170 - 29290123
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||| ||||||||||||||||||| || ||||||||||||| ||||||    
T  29290170 ctttcccatggtgggaaacaactctccatttccatgctaaaccccacc 29290123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 25970153 - 25970105
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  25970153 ctttcccatggtgggaaacaactcccctttcccatgctaaaccccacca 25970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 36450775 - 36450726
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccaccat 378  Q
    |||| ||||||||| ||||||||||||||| ||||||||||| |||||||    
T  36450775 ctttcccatggtggaaaacaactcccctttcccatgctaaataccaccat 36450726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 38009331 - 38009284
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||||||||||||||||| |  ||||| |||||||||||||||||    
T  38009331 cttttccatggtgggaaacaattatcctttcccatgctaaatcccacc 38009284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 39429898 - 39429985
Alignment:
Q  289 taaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||| ||||| ||| |||||| | |  ||| |||||| |||| ||||||||||||||||||| || || |||||||||| ||||||    
T  39429898 taaaattaatactcctctttaatttaatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaaccccacc 39429985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 45330612 - 45330565
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||||||||||||||||||| ||||  ||||| |||||    
T  45330612 cttttccatggtgggaaacaactcccctttcccattttaaattccacc 45330565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 36451428 - 36451474
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccac 375  Q
    ||||||||||||| ||||||||||| |||| |||||||||| |||||    
T  36451428 cttttccatggtgagaaacaactcctctttcccatgctaaaccccac 36451474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 22062233 - 22062274
Alignment:
Q  335 catggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||    
T  22062233 catggtgggaaacaattccccttttccatactaaaccccacc 22062274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 31911400 - 31911489
Alignment:
Q  260 agaaaaaatatagtgtgaacagaccaagctaaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaa 349  Q
    ||||||||||||||||| | |||||| | |||||||  ||| |||  |||||||||  ||  |||||  |||||||||||||||||||||    
T  31911400 agaaaaaatatagtgtggatagaccatgataaaatcggtactcctccttaatctgatggtcaaaaaatacttttccatggtgggaaacaa 31911489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 32450150 - 32450239
Alignment:
Q  260 agaaaaaatatagtgtgaacagaccaagctaaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaa 349  Q
    ||||||||||||||||| | |||||| | |||||||  ||| |||  |||||||||  ||  |||||  |||||||||||||||||||||    
T  32450150 agaaaaaatatagtgtggatagaccatgataaaatcggtactcctccttaatctgatggtcaaaaaatacttttccatggtgggaaacaa 32450239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 47326767 - 47326828
Alignment:
Q  306 tttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgcta 367  Q
    |||||||| || ||| |||||| |||| ||||||||||||||||||  ||||| ||||||||    
T  47326767 tttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttcctttcccatgcta 47326828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 47341563 - 47341624
Alignment:
Q  306 tttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgcta 367  Q
    |||||||| || ||| |||||| |||| ||||||||||||||||||  ||||| ||||||||    
T  47341563 tttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttcctttcccatgcta 47341624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 232050 - 232098
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    |||| |||||||||||||||||| |||||| |||| ||||| |||||||    
T  232050 ctttcccatggtgggaaacaacttccctttcccatactaaaccccacca 232098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 30808668 - 30808616
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccaccatggt 381  Q
    |||| ||||||||||||||||||| ||||| ||||  ||||| ||||||||||    
T  30808668 ctttcccatggtgggaaacaactctcctttcccattttaaatgccaccatggt 30808616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 39429312 - 39429224
Alignment:
Q  289 taaaatcaatacacctgtttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    |||||| ||||| |||  ||||||| |  ||| |||||| |||| ||||||| ||||||||||| || || ||||||||||| ||||||    
T  39429312 taaaattaatactcctccttaatctaatggttgaaaaaaactttcccatggtaggaaacaactctccattcccatgctaaatgccacca 39429224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 34716494 - 34716424
Alignment:
Q  306 tttaatctgaccgtttaaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||| | || |||||| |||||||||| ||||||||||||| || || |||||||||| ||||||    
T  34716494 tttaatctgatccttgaaaaaagcttttccatgatgggaaacaactctccattcccatgctaaaccccacc 34716424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 47334246 - 47334199
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  47334246 ctttcccattgtgggaaacaactccccttttccaggctaaaccccacc 47334199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 50950192 - 50950145
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||||||||||||  || |||||||||||||| |||||    
T  50950192 cttttccatggtgggaaacaactatccatttccatgctaaatgccacc 50950145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 4640575 - 4640526
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccaccat 378  Q
    |||| |||||||||||||||| |||||||| ||||||||||  |||||||    
T  4640575 ctttcccatggtgggaaacaattcccctttaccatgctaaactccaccat 4640526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 6767028 - 6766972
Alignment:
Q  322 aaaaaatcttttccatggtgggaaacaactccccttttccatgctaaatcccaccat 378  Q
    |||||| |||||||||| ||| |||||| ||||||||||||| |||||  |||||||    
T  6767028 aaaaaaacttttccatgatggaaaacaattccccttttccatactaaactccaccat 6766972  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 30466229 - 30466189
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaa 369  Q
    |||| |||||||||||||||||||||| || ||||||||||    
T  30466229 ctttcccatggtgggaaacaactccccattcccatgctaaa 30466189  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 41884237 - 41884277
Alignment:
Q  336 atggtgggaaacaactccccttttccatgctaaatcccacc 376  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  41884237 atggtgggaaacaatttcccttttccatgctaaaccccacc 41884277  T

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Target: scaffold0129 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 43219 - 43267
Alignment:
Q  329 cttttccatggtgggaaacaactccccttttccatgctaaatcccacca 377  Q
    |||| ||||| |||||||||||||||||||||||| ||||| |||||||    
T  43219 ctttcccatgatgggaaacaactccccttttccatactaaaccccacca 43267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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