View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6857_high_2 (Length: 554)

Name: NF6857_high_2
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6857_high_2
NF6857_high_2
[»] chr5 (10 HSPs)
chr5 (153-538)||(42518666-42519045)
chr5 (202-281)||(42509329-42509411)
chr5 (65-120)||(42518478-42518533)
chr5 (19-66)||(42518397-42518444)
chr5 (27-120)||(42508984-42509087)
chr5 (278-342)||(687293-687353)
chr5 (116-180)||(42509237-42509305)
chr5 (296-340)||(8040252-8040296)
chr5 (296-340)||(15183964-15184008)
chr5 (296-340)||(33002763-33002807)
[»] chr6 (8 HSPs)
chr6 (409-536)||(9427781-9427917)
chr6 (462-536)||(1035045-1035119)
chr6 (296-340)||(7193395-7193439)
chr6 (295-342)||(22579991-22580038)
chr6 (296-340)||(3543010-3543054)
chr6 (296-340)||(15082454-15082498)
chr6 (296-340)||(33018224-33018268)
chr6 (296-340)||(33480575-33480619)
[»] chr8 (3 HSPs)
chr8 (465-536)||(11493627-11493698)
chr8 (296-340)||(5035223-5035267)
chr8 (296-340)||(34992211-34992255)
[»] chr4 (17 HSPs)
chr4 (296-439)||(36864874-36865012)
chr4 (296-340)||(9939179-9939223)
chr4 (295-340)||(17648091-17648136)
chr4 (278-340)||(36451374-36451432)
chr4 (296-339)||(25970162-25970205)
chr4 (295-340)||(36865664-36865709)
chr4 (295-340)||(39522431-39522476)
chr4 (296-340)||(9939318-9939362)
chr4 (296-340)||(11417744-11417788)
chr4 (296-340)||(11417884-11417928)
chr4 (296-340)||(11806148-11806192)
chr4 (296-340)||(21166322-21166366)
chr4 (296-340)||(26610402-26610446)
chr4 (296-340)||(26611230-26611274)
chr4 (296-340)||(29650472-29650516)
chr4 (296-340)||(38143545-38143589)
chr4 (296-340)||(38143684-38143728)
[»] chr7 (4 HSPs)
chr7 (296-460)||(37864137-37864298)
chr7 (296-340)||(4261262-4261306)
chr7 (296-340)||(17145679-17145723)
chr7 (296-340)||(38071955-38071999)
[»] chr1 (7 HSPs)
chr1 (296-340)||(47334256-47334300)
chr1 (278-340)||(23440660-23440718)
chr1 (296-340)||(48972392-48972436)
chr1 (296-340)||(50827038-50827082)
chr1 (409-460)||(9948162-9948213)
chr1 (296-340)||(16270264-16270308)
chr1 (296-340)||(16271095-16271139)
[»] chr3 (11 HSPs)
chr3 (296-392)||(19132710-19132803)
chr3 (295-340)||(38922799-38922844)
chr3 (296-340)||(44686311-44686355)
chr3 (409-439)||(45500631-45500661)
chr3 (296-340)||(3971049-3971093)
chr3 (296-340)||(3998788-3998832)
chr3 (296-340)||(19132620-19132664)
chr3 (296-340)||(32490142-32490186)
chr3 (296-340)||(45242123-45242167)
chr3 (296-340)||(45500530-45500574)
chr3 (296-340)||(52492226-52492270)
[»] chr2 (5 HSPs)
chr2 (295-340)||(14573946-14573991)
chr2 (296-338)||(4479651-4479693)
chr2 (295-340)||(21471901-21471946)
chr2 (296-340)||(37548055-37548099)
chr2 (296-340)||(38834444-38834488)
[»] scaffold0700 (1 HSPs)
scaffold0700 (295-335)||(5375-5415)
[»] scaffold0041 (1 HSPs)
scaffold0041 (296-340)||(27278-27322)
[»] scaffold0332 (1 HSPs)
scaffold0332 (296-340)||(9205-9249)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 153 - 538
Target Start/End: Original strand, 42518666 - 42519045
Alignment:
Q  153 agaaaacagatgttgtaaaagtacatcatcagcctacttactagttacgttactactcaatttatcgtaaattatagtaaaaatttatctcaactagcat 252  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42518666 agaaaacaaatgttgtaaaagtacatcatcagcctacttactatttacgttactactcaatttatcgtaaattatagtaaaaatctatctcaactagcat 42518765  T
Q  253 caatttctacaatatcaaattattcaaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactcg 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||      
T  42518766 caatttctacaatatcaaattattcaaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtact------atctcaacactaa 42518859  T
Q  353 attattgttttatattatttttcatcctctctttcatgtcacacttccatagcacaaccaccactaaatcatagattcagcaaccaccgcaccaccacac 452  Q
    |||||||||||||| ||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42518860 attattgttttatactatttttcaccctctctttcatgtcacacacccataccacaaccaccactaaatcatagattcagcaaccaccgcaccaccacac 42518959  T
Q  453 actaccatatggaaaatttctgatgatttatagctgtttatttttaagtaaccttgacattttttgaattaagaatcataaaattg 538  Q
    ||||||||||| ||  ||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||    
T  42518960 actaccatatgaaatttttttgatgatgtatagttgtttattcttaagtaaccttgacattttttgaattcagaattataaaattg 42519045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 42509329 - 42509411
Alignment:
Q  202 ttactactcaatttatcgtaaattatagtaa--aaatt-tatctcaactagcatcaatttctacaatatcaaattattcaaaa 281  Q
    ||||||||||| |||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42509329 ttactactcaaattatcgcaaattatagtaataaaattctatctcaactagcatcaatttctacaatatcaaattattcaaaa 42509411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 42518478 - 42518533
Alignment:
Q  65 agtattatactaattcattatgcacacttaatttgacacattgattctctcttgtg 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42518478 agtattatactaattcattatgcacacttaatttgacacattaattctctcttgtg 42518533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 42518397 - 42518444
Alignment:
Q  19 tttcataggtacacgattgtttagatttcaatcaattaatttgatgag 66  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  42518397 tttcataggtacacgattgtttagatttcaattaattaatttgatgag 42518444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 42508984 - 42509087
Alignment:
Q  27 gtacacgattgtttagatttcaatcaattaatttgatgagtattatactaa-----------ttcattatgcacacttaatttgacacattgattctctc 115  Q
    |||||||||||||||||||||||| ||||||||||||||| | || |||||           |||||||||||||||||||| |||||||| ||||||||    
T  42508984 gtacacgattgtttagatttcaattaattaatttgatgagaaata-actaatgtagtataatttcattatgcacacttaattcgacacattaattctctc 42509082  T
Q  116 ttgtg 120  Q
    |||||    
T  42509083 ttgtg 42509087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 687353 - 687293
Alignment:
Q  278 aaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaatc 342  Q
    |||||||||||||||||||    ||||||||||||| |||| |||| |||| |||||||||||||    
T  687353 aaaagttgattatgtccat----tagattaaatgaggaacatattcctatcatactctctcaatc 687293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 42509237 - 42509305
Alignment:
Q  116 ttgtgttgagttgtactct---acgagtatctg-atgtttaagaaaacagatgttgtaaaagtacatca 180  Q
    |||||||||||||||||||   |||||| || | ||||||||||||||| | |||||||||||||||||    
T  42509237 ttgtgttgagttgtactcttctacgagtttcagtatgtttaagaaaacaaacgttgtaaaagtacatca 42509305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 8040252 - 8040296
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  8040252 tccattagattaaatgaggaatatattcttatcatactctctcaa 8040296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 15184008 - 15183964
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  15184008 tccattagattaaatgaggaacatattcctatcatactctctcaa 15183964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 33002807 - 33002763
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  33002807 tccattagattaaatgaggaacatattcctatcatactctctcaa 33002763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 409 - 536
Target Start/End: Complemental strand, 9427917 - 9427781
Alignment:
Q  409 accaccactaaatcatagattcagcaaccaccgc-accaccacacactaccata--------tggaaaatttctgatgatttatagctgtttatttttaa 499  Q
    |||||||||||||||||||||||||||||||    |||||||||||| |||||         ||||||||||||| |||| ||||| |||||||| ||||    
T  9427917 accaccactaaatcatagattcagcaaccacttttaccaccacacaccaccatggttgttgctggaaaatttctggtgatgtatagttgtttattcttaa 9427818  T
Q  500 gtaaccttgacattttttgaattaagaatcataaaat 536  Q
    |||||||||| |||||||||||| | |||||||||||    
T  9427817 gtaaccttgatattttttgaatttaaaatcataaaat 9427781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 462 - 536
Target Start/End: Original strand, 1035045 - 1035119
Alignment:
Q  462 tggaaaatttctgatgatttatagctgtttatttttaagtaaccttgacattttttgaattaagaatcataaaat 536  Q
    |||||| |||||| |||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  1035045 tggaaagtttctggtgatgtatagttgtttattcttaagtaaccttgacattttttgaatttagaatcataaaat 1035119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 7193395 - 7193439
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  7193395 tccattagattaaatgaggaacatattcttatcatactctctcaa 7193439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 22579991 - 22580038
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactctctcaatc 342  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||||    
T  22579991 atccattagattaaatgaggaacatattcctatcatactctctcaatc 22580038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 3543054 - 3543010
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  3543054 tccattagattaaatgaggaacatattcctatcatactctctcaa 3543010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 15082454 - 15082498
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  15082454 tccattagattaaatgaggaacatattcctatcatactctctcaa 15082498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 33018224 - 33018268
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||    
T  33018224 tccattagattaaatgaggaacatatttttatcatactctctcaa 33018268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 33480619 - 33480575
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  33480619 tccattagattaaatgaggaacatattcctatcatactctctcaa 33480575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 465 - 536
Target Start/End: Original strand, 11493627 - 11493698
Alignment:
Q  465 aaaatttctgatgatttatagctgtttatttttaagtaaccttgacattttttgaattaagaatcataaaat 536  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  11493627 aaaatttctggtgatgtatagttgtttattcttaagtaaccttgacattttttgaattctgaatcataaaat 11493698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 5035267 - 5035223
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  5035267 tccattagattaaatgaggaatacattcttatcatactctctcaa 5035223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 34992255 - 34992211
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  34992255 tccattagattaaatgaggaacatattcctatcatactctctcaa 34992211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 439
Target Start/End: Original strand, 36864874 - 36865012
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactcgattattgttttatattatttttcatcctctctttcatgt---c 392  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||     | |||| ||||||| ||||||| ||| |||||| |||||||||||||   |    
T  36864874 tccattagattaaatgagaaacatattcctatcatactctctca-----accactagattatttttttatactatctttcatactctctttcatgtcccc 36864968  T
Q  393 acacttccatagcacaaccaccactaaatcatagattcagcaaccac 439  Q
    ||||| ||||   || ||||||||||||||||| ||||| |||||||    
T  36864969 acactcccat---accaccaccactaaatcataaattcaacaaccac 36865012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 9939179 - 9939223
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  9939179 tccattagattaaatgagaaacatattcttatcatactctctcaa 9939223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 17648136 - 17648091
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||    
T  17648136 atccattagattaaataagaaataaattcttatcttactctctcaa 17648091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 36451432 - 36451374
Alignment:
Q  278 aaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||||    |||||||||||| |||||||| |||||| |||||||||||    
T  36451432 aaaagttgattatgtccat----tagattaaatgaaaaacaaatccttatcctactctctcaa 36451374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 25970162 - 25970205
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctca 339  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||    
T  25970162 tccattagattaaatgagaaacaaatctttatcatactctctca 25970205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 36865709 - 36865664
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  36865709 atccattagattaaatgaggaacatattcctatcatactctctcaa 36865664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 39522431 - 39522476
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  39522431 atccattagattaaatgaggaacatattcctatcatactctctcaa 39522476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 9939362 - 9939318
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  9939362 tccattagattaaatgaggaacatattcctatcatactctctcaa 9939318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 11417744 - 11417788
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  11417744 tccattagattaaatgaggaacatattcctatcatactctctcaa 11417788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 11417928 - 11417884
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  11417928 tccattagattaaatgaggaacatattcctatcatactctctcaa 11417884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 11806148 - 11806192
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||    
T  11806148 tccattagattaaatgaggaacacatttttatcctactctctcaa 11806192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 21166366 - 21166322
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  21166366 tccattagattaaatgaggaacatattcctatcatactctctcaa 21166322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 26610402 - 26610446
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  26610402 tccattagattaaatgaggaacatattcctatcatactctctcaa 26610446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 26611274 - 26611230
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  26611274 tccattagattaaatgaggaacatattcctatcatactctctcaa 26611230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 29650472 - 29650516
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  29650472 tccattagattaaatgaggaacatattcctatcatactctctcaa 29650516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 38143545 - 38143589
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  38143545 tccattagattaaatgaggaacatattcctatcatactctctcaa 38143589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 38143728 - 38143684
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  38143728 tccattagattaaatgaggaacatattcctatcatactctctcaa 38143684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 460
Target Start/End: Complemental strand, 37864298 - 37864137
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactcgattattgttttatattattttt--catcctctctttcatgt-- 391  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||     | |||| ||||||| ||||||| ||| |||  ||  |||||||||||||      
T  37864298 tccattagattaaatgagaaacatattcctatcatactctctca-----accactagattatttttttatactatctttcacactctctctttcatgtcc 37864204  T
Q  392 -cacacttccatagcacaaccaccactaaatcatagattcagcaaccaccgcaccaccacacactaccat 460  Q
     |||||  ||||   || ||||||||||||||| | ||||| ||||||| |||||||||||||| |||||    
T  37864203 ccacacacccat---accaccaccactaaatcacaaattcaacaaccactgcaccaccacacaccaccat 37864137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 4261262 - 4261306
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  4261262 tccattagattaaatgaggaatacattcttatcatactctctcaa 4261306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 17145679 - 17145723
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  17145679 tccattagattaaatgaggaacatattcctatcatactctctcaa 17145723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 38071955 - 38071999
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  38071955 tccattagattaaatgaggaacatattcctatcatactctctcaa 38071999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 47334256 - 47334300
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  47334256 tccattagattaaatgagaaacaaatccttatcctactctctcaa 47334300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 23440660 - 23440718
Alignment:
Q  278 aaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||    ||||||||||||||||||| |||| |||| |||||||||||    
T  23440660 aaaagttgattatgtcca----ttagattaaatgagaaacatattcctatcatactctctcaa 23440718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 48972436 - 48972392
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||    
T  48972436 tccattagattaaatgagaaacatattcctatcatactctctcaa 48972392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 50827082 - 50827038
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||    
T  50827082 tccattagattaaatgagaaacatatttttatcatactctctcaa 50827038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 9948162 - 9948213
Alignment:
Q  409 accaccactaaatcatagattcagcaaccaccgcaccaccacacactaccat 460  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||| |||||    
T  9948162 accaccactaaatcacaaattcaacaaccactgcaccaccacacaccaccat 9948213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 16270264 - 16270308
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  16270264 tccattagattaaatgaggaacatattcctatcatactctctcaa 16270308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 16271139 - 16271095
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  16271139 tccattagattaaatgaggaacatattcctatcatactctctcaa 16271095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 392
Target Start/End: Complemental strand, 19132803 - 19132710
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactcgattattgttttatattattttt--catcctctctttcatgtc 392  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||     | |||| ||||||| ||||||||||| |||  ||| ||||||||||||||    
T  19132803 tccattagattaaatgaggaacatattcttatcatactctctca-----accactggattatttttttatattatctttcacattctctctttcatgtc 19132710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 38922799 - 38922844
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||    
T  38922799 atccattagattaaatgagaaacatattcctatcatactctctcaa 38922844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 44686311 - 44686355
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||    
T  44686311 tccattagattaaatgagaaacatattcctatcatactctctcaa 44686355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 439
Target Start/End: Original strand, 45500631 - 45500661
Alignment:
Q  409 accaccactaaatcatagattcagcaaccac 439  Q
    |||||||||||||||||||||||||||||||    
T  45500631 accaccactaaatcatagattcagcaaccac 45500661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 3971049 - 3971093
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  3971049 tccattagattaaatgaggaacatattcctatcatactctctcaa 3971093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 3998832 - 3998788
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  3998832 tccattagattaaatgaggaacatattcctatcatactctctcaa 3998788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 19132620 - 19132664
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  19132620 tccattagattaaatgaggaacatattcctatcatactctctcaa 19132664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 32490186 - 32490142
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  32490186 tccattagattaaatgaggaacatattcctatcatactctctcaa 32490142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 45242123 - 45242167
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  45242123 tccattagattaaatgaggaacatattcctatcatactctctcaa 45242167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 45500530 - 45500574
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| ||||||||  |||||||||||    
T  45500530 tccattagattaaatgaggaacacattcttattctactctctcaa 45500574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 52492270 - 52492226
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  52492270 tccattagattaaatgaggaatacattcttatcatactctctcaa 52492226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 14573991 - 14573946
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||    
T  14573991 atccattagattaaatgagaaacatattcctatcatactctctcaa 14573946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 4479693 - 4479651
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctc 338  Q
    |||||||||||||||||| |||| ||||||||| |||||||||    
T  4479693 tccattagattaaatgaggaacatattcttatcatactctctc 4479651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 21471946 - 21471901
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  21471946 atccattagattaaatgaggaacatattcctatcatactctctcaa 21471901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 37548055 - 37548099
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  37548055 tccattagattaaatgaggaacatattcctatcatactctctcaa 37548099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 38834444 - 38834488
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||    
T  38834444 tccattagattaaatgaggaacatatttttatcatactctctcaa 38834488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 5375 - 5415
Alignment:
Q  295 atccattagattaaatgagaaacaaattcttatcgtactct 335  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  5375 atccattagattaaatgagaaacacattcttatcctactct 5415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 27278 - 27322
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  27278 tccattagattaaatgaggaacacattcttatcatactctctcaa 27322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 9249 - 9205
Alignment:
Q  296 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 340  Q
    |||||||||||||||||  |||| ||||||||| |||||||||||    
T  9249 tccattagattaaatgatgaacatattcttatcatactctctcaa 9205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University