View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6857_high_3 (Length: 526)
Name: NF6857_high_3
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Complemental strand, 48877925 - 48877425
Alignment:
| Q |
19 |
aatatgtgaaatgttgtagcctcacaaccacaaccagatttggcaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877925 |
aatatgtgaaatgttgtagccccacaaccgcaaccagatttgacaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
48877826 |
T |
|
| Q |
119 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877825 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
48877726 |
T |
|
| Q |
219 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877725 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
48877626 |
T |
|
| Q |
319 |
tttaataaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagtgtcccattcccat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48877625 |
tttaataaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagtgtc------ccat |
48877532 |
T |
|
| Q |
419 |
aagctaactagggaggctacatatatggctaatccttaagtgtcaattctctaactatgaaacttaattactaccaaaaacttatctgcaatattcctaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877531 |
aagctaactagggaggctacatatatggctaatcctcaagtgtctattctctaactatgaaacttaattactaccaaaaacttatctgcaatattcctaa |
48877432 |
T |
|
| Q |
519 |
acagctc |
525 |
Q |
| |
|
||||||| |
|
|
| T |
48877431 |
acagctc |
48877425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 33016227 - 33016147
Alignment:
| Q |
241 |
caagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattctttt |
321 |
Q |
| |
|
||||||||||| || || ||| ||||| | |||||||||||||||||||| |||| ||| ||| || |||| |||| |||| |
|
|
| T |
33016227 |
caagctatcaagtgaacatcagagttgaggttgaataatgttatttttgagttaggtgcgaaaataatggtagattttttt |
33016147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University