View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_high_5 (Length: 341)
Name: NF6857_high_5
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 36677431 - 36677102
Alignment:
| Q |
1 |
ctccaacatatgacatttctgaattccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaaca |
100 |
Q |
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| T |
36677431 |
ctccaacatatgacatttccgaactccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggctgtcaatgctaaaca |
36677332 |
T |
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| Q |
101 |
agtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgtgcacccag |
200 |
Q |
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| T |
36677331 |
agtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgtgcacccag |
36677232 |
T |
|
| Q |
201 |
ttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcgcaaatgatgtaatgt |
299 |
Q |
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| T |
36677231 |
ttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcgcaaatgatgtaatgt |
36677132 |
T |
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| Q |
300 |
aatggaaaattcaaatgaataagtgatgtc |
329 |
Q |
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| T |
36677131 |
aatggaaaattcaaatgaataagtgatgtc |
36677102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 36687513 - 36687184
Alignment:
| Q |
1 |
ctccaacatatgacatttctgaattccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaaca |
100 |
Q |
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| T |
36687513 |
ctccaacatatgacatttccgaactccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggctgtcaatgctaaaca |
36687414 |
T |
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| Q |
101 |
agtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgtgcacccag |
200 |
Q |
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| T |
36687413 |
agtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgtgcacccag |
36687314 |
T |
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| Q |
201 |
ttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcgcaaatgatgtaatgt |
299 |
Q |
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| T |
36687313 |
ttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcgcaaatgatgtaatgt |
36687214 |
T |
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| Q |
300 |
aatggaaaattcaaatgaataagtgatgtc |
329 |
Q |
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| T |
36687213 |
aatggaaaattcaaatgaataagtgatgtc |
36687184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 36665304 - 36665431
Alignment:
| Q |
200 |
gttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctt-ttaagatgatatttcaagttacgattcgcaa--atg--atgt |
294 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||||||||| ||||||| ||| ||| |||| |
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| T |
36665304 |
gttagtggttattatgtttaagtaaattgtatatggaatcttagattttgagtgcttctaaagatcatatttcaagtcacgattcacaatgatgtaatgt |
36665403 |
T |
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| Q |
295 |
aatgtaatggaaaattcaaatgaataag |
322 |
Q |
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| T |
36665404 |
aatgtaatggaaaattcaaatgaataag |
36665431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 36664849 - 36664931
Alignment:
| Q |
36 |
ctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaacaagtcgtttatgatcctat |
118 |
Q |
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| T |
36664849 |
ctagtggtgtcgttgaacgataattatgcacatttagatttcattgcggctatcaatgctaaacaactcatttatgatcctat |
36664931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 36704438 - 36704362
Alignment:
| Q |
39 |
gtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaacaagtcgtttatgatcc |
115 |
Q |
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| T |
36704438 |
gtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcc |
36704362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 36664986 - 36665022
Alignment:
| Q |
120 |
attttacaattattattgtgcttcaaatatatctact |
156 |
Q |
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| T |
36664986 |
attttacaactattattgtgcttcgaatatatctact |
36665022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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