View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_high_6 (Length: 286)
Name: NF6857_high_6
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 48877100 - 48877358
Alignment:
| Q |
20 |
actacaacctgcatgaccaagcagagaagtttggctacactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcgga |
119 |
Q |
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| T |
48877100 |
actacaacctgtatgaccaagcagagaagtttggctccactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcgga |
48877199 |
T |
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| Q |
120 |
caattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtag |
219 |
Q |
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| T |
48877200 |
caattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtag |
48877299 |
T |
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| Q |
220 |
actatcatagtgtgtttgcggttggcagaaataccggaactggaactgtctttatgcaa |
278 |
Q |
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| T |
48877300 |
actatcatagtgtgtttgcggttggcagaaataccggaactggaattgtctttatgcaa |
48877358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 8380756 - 8380634
Alignment:
| Q |
96 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaactcaggg |
194 |
Q |
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| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaagcaccagttgcagcacaggg |
8380657 |
T |
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| Q |
195 |
ttttcgaattcaatgtaacaagt |
217 |
Q |
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| T |
8380656 |
gtttcggattcagtgtaacaagt |
8380634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 53456132 - 53455968
Alignment:
| Q |
91 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
189 |
Q |
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|||| ||||||||||| | ||||| ||||| |||||| |||||||||| |||||| ||||| | ||||||| |||||||||||| ||| || |||| || |
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| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
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| Q |
190 |
cagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaatacc |
254 |
Q |
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| T |
53456032 |
cggggttttcgaattcaatgtaacaagtgggctatcatagtgcgtttactgttgggagagatacc |
53455968 |
T |
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