View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_high_7 (Length: 272)
Name: NF6857_high_7
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 46798026 - 46797774
Alignment:
| Q |
20 |
caagtacacattgaaatagctgattataattttaaagtatgtacgtattcatgtagtatatgatataaacaagtacacatagagatagtatccaagtgaa |
119 |
Q |
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| T |
46798026 |
caagtacacatagaaatagctgattataattttaaagtatgtacgtattcatgtagtatatgatataaacaagtacacatagagatagtatccaagtgaa |
46797927 |
T |
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| Q |
120 |
ggtgcaatgggtgtcagagaagaaagagcttttttcgggattgaaatgaagttatgtgggcgcgcattcaaaaagaacaccgagtttgaagtttgtatta |
219 |
Q |
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| T |
46797926 |
ggtgcaatgggtgtcagagaagaaagagcttttttcgggattgaaatgaagttatgtgggcgcgcattcaaaaagaacaccgagtttgaagtttgtatta |
46797827 |
T |
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| Q |
220 |
ccaatttgtactataatttcagccttttcagaaaaatgaaaatgcaatttttt |
272 |
Q |
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| T |
46797826 |
ccaatttgtactataatttcagccttttcagaaaaatgaaaatgcaatttttt |
46797774 |
T |
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