View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_low_1 (Length: 705)
Name: NF6857_low_1
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 11 - 594
Target Start/End: Original strand, 46008566 - 46009149
Alignment:
| Q |
11 |
atggacatcaccaacacagtgaaaaacagagaacaagaaaaagcgaaagaagattttgttgctcaaatcaaattcaagaaagctcttaaaccattagatg |
110 |
Q |
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| T |
46008566 |
atggacatcaccaacacagtgaaaaacagagaacaagaaaaagtgaaagaagattttgttgctcaaatcaaattcaagaaagctcttaaaccattagatg |
46008665 |
T |
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| Q |
111 |
aatcaaaccaaggaaaagtaccctcaacaaacacatctcattccccaagactcagcagattcaatgataacaaccataaacattcaccaacaactactcc |
210 |
Q |
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| T |
46008666 |
aatcaaatcaaggaaaagtaccctcaacaaacacatctcattccccaagactcagcagattcaatgataacaaccataaacattcaccaacaactactcc |
46008765 |
T |
|
| Q |
211 |
aagagaccaaaatacacatcaagtactaaaacaatcatcaccaccacctgcagtcaacattgaagcacaagtttcaagagtttcaacaaagccacaaaca |
310 |
Q |
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| T |
46008766 |
aagagaccaaaatacacatcaagtactaaaacaatcatcaccaccacctgcagtcaacattgaagcacaagtttcaagagtttcaacaaagccacaaaca |
46008865 |
T |
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| Q |
311 |
caagcaatgtcagagaaggaggacaaaaaatctttcccaaaatgcaagaaaacagcacatgggaatttgagtccacggataaacagaaacaagcctcctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008866 |
caagcaatgtcagagaaggaggacaaaaaatctttcccaaaatgcaagaaaacagcacatgggaatttgagtccacggataaacagaaacaagcctcctc |
46008965 |
T |
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| Q |
411 |
agaaatcatcatcaatcagaaacaagcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008966 |
agaaatcatcatcaatcagaaacaagcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaa |
46009065 |
T |
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| Q |
511 |
caacaatgtcccaaatcttctccatctcaaaacacacccttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009066 |
caacaatgtcccaaatcttctccatctcaaaacacacctttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
46009149 |
T |
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