View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_low_17 (Length: 226)
Name: NF6857_low_17
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 46797283 - 46797350
Alignment:
| Q |
159 |
ttgtgccataacaaaaatctgtactcctctttcgtgtcaaatagctcaacgacgaaactcaagcacta |
226 |
Q |
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| T |
46797283 |
ttgtgccataacaaaaatttgtactcctctttcgtgtcaaatagctcaacgacgaaactcaaacacta |
46797350 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 46797164 - 46797230
Alignment:
| Q |
36 |
gggcgtaagccctcttttactaccaacnnnnnnntagtgttatttatatgttaaaacaactcaattgc |
103 |
Q |
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| T |
46797164 |
gggcgtaagccctcttttactaccaacaaaaaa-tagtgttatttatatgttaaaacaactcaattgc |
46797230 |
T |
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